Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0507 ATGGACCAACGACATAAAGTGATTCCTCTACTGCTGCTGCTTTTCCAAGTTCTGCATGTAGCAGCAGAGACAGACAGTCGAGATTATTCTGGCCTAAATTCTTTTACGCAATCCTGGAGTAACAAGCCACAAAATTGGGTGGGTACAGATCCTTGTGGCAGTGAATGGGATGGAATTCGTTGCAGCGATTCAAGAATTACCCAATTGAAACTACCAGGCTTGAATTTGGTGGGCCAGCTGTCTTCGGCAATTCAGTCTTTATCTGAGCTAGATACTCTGGATCTTTCTTACAACACGGGCATGACAGGAACAATTCCACAAGAAATTGGGAAtttgaaaaatctaaaatccCTAGCATTGGTTGGTTGTGGTTTCTCAGGTCCTATTCCAGATTCAATAGGATCTCTAAAGCAGCTGACCTTTCTAGCACTGAATTCTAATAAGTTCAGTGGAACTATACCACGCTCTCTTGGCAACCTATCAAATATTGATTGGCTTGATCTTGCTGAAAACCAGATTGAAGGGAATATTCCTGTCTCTGATGACCAAGGACGACCTGGCCTTGACCTGCTCCTTAAGGCTCAACACTTTCATATGGGGAGCAATATGCTCTCTGGTACAATACCAGCAAAACTTTTTAACTCCAGTATGCATCTAAAACACGTGCTTTTCGACCACAATCAACTAGAGGGTAATATTCCTGGAACCATTAGTACTGTGAGCACATTGGAGGTTGTGCGCTTTGATGGGAATGGGTTAACTGGGGGAGTGCCTTCAAACCTCAACAATCTCGGAGAACTTAGTGAGatCTATTTATCTCACAATAAGCTGAATGGCTCTCTGCCGGATTTTACTGGAATGAATAGTCTCACCTATGTGGACCTGAGTGATAATAGTTTCAATGCCTCTGGTATTCCTTCATGGGTTACAAGTCTGCCAGAACTGACAACAGTGATACTAGCGACGAACCTTCTCAGTGGCGCATTAAATCTTAGCAATGGCTACAGCAATAGTCTGCAACTCATTAATTTGGAGAATAATGAAATAACAGAGCTTGACCCGcaaaacaaaataccaaattttaCGCTAAGACTAGCTAACAACCCAATCTGTCTTGAAAGTGGAGCTTCTGAAAACAGTTACTGCAAAGTGCCAGTATCCATTCCCTCATATTCAACACCACCAAATAATTGTTCACCTCCACAATGCAGCTCCGATCAGATTTCCAGCCCAAATTGTAAATGTGCATTTCCCTATGCTGGACTTCTTATATCAAGAGCTCTTAGTTTCTCAAACTACGGTAACACAAGTTACTATAGGGAGCTTGAGCAGTCTCTGATGGATACTTTTCGAAACCAAAGTATTCCAGTGGATTCAGTTTCTCTTAGTAACCCCTCCAGGAATTCAACTTCGGATAATTTTCAATTGACTCTGAATGTCTTCCCTTTTCAAACTGATCGTTTCAATACAACTGGAGTTTTAACTATTGCTTTTCTGCTTAGCAACCAAATTTACAAACCCCCAGAATTTTTCTCCCCTTACATCTTCAAGGGTGCTAATTATGGATACTTCGGAGGAGAACCAGAAGGATCAAATTCATCATCAAATACAGGGGTCATAGTTGGTGCAGTACTTGCTGTTTTGATCTTTGTTGTGCTAGCATTCCTTGCAGGGATGTATGCCATTCGCCAAAAAAGAAGAGCAAAAAGATCTGCAGAGTTGAACCCTTTTGCAAATTGGGAACAGAATAAAAATAGTGGCACTGCTCCTCAGTTGAAAGGAGCACGATGGTTTTCTTTTGATGAGCTAAGGAAATACACCAACAACTTCTCAGAAGCCAATACTATTGGATCTGGAGGCTATGGAAAGGTTTACCGTGGAACTCTTCCCTCTGGGGAATTGGTTGCCATCAAACGTGCTGCAAGAGAGTCTATGCAGGGTGCTGTTGAGTTTAAAACAGAGATTGAACTTCTATCAAGGGTCCATCATAAGAATCTCGTTGGTCTTGTGGGTTTCTGTTTTGAGGAGGGTGAACAAATGCTGGTGTATGAGTACATTCCAAATGGAACTTTAATGGATAGTCTTTCAGGAAAGTCTGGGATCTGGATGGATTGGATACGGAGGCTTAAAGTAGCATTAGGTGCAGCCAGGGGTCTGGCCTATCTTCATGAACTTGCTAACCCACCAATCATACACAGGGACATAAAATCAAGCAATATACTACTTGATTATCACCTCAATGCAAAAGTTGCAGATTTTGGTCTCTCCAAACTTCTTGTTGATAGAAAAAGGGGCTATGTCACCACTCAGGTCAAAGGGACAATGGGATACTTGGATCCTGAATATTATATGACCCAGCAGTTGACTGAAAAGAGCGATGTATATAGCTTTGGAGTGCTAATGCTGGAACTAGTAACAGCAAGAAGGCCAATAGAGCAAGGAAAGTATATTGTAAGAGAGGTAAAGAGGGTAATGGACACATCGAAAGATTTATACAACCTTCAGTCCATTCTGGATCCAACCATAATGAAAGCGACAAGACCAAAAGGTTTAGAAAAGTTTGTAATGTTGGCAATGAGGTGCGTCAAAGAATATGCAGCTGAGAGGCCTACAATGTCTGAGGTTGTAAAAGAGATTGAGAACATAATCAAACTTGTTGGATTGAACCCCAATTCTGAATCAGCTACAACATCTGAAACTTACGAGGAAGCAAGTGGAGGAAATGCCCAATATCCTTACTGGGAAGAAGATTTTAGCTATAGTGGAAGTTTTCCATCAAGGGCTTAA 2787 0.4119 MDQRHKVIPLLLLLFQVLHVAAETDSRDYSGLNSFTQSWSNKPQNWVGTDPCGSEWDGIRCSDSRITQLKLPGLNLVGQLSSAIQSLSELDTLDLSYNTGMTGTIPQEIGNLKNLKSLALVGCGFSGPIPDSIGSLKQLTFLALNSNKFSGTIPRSLGNLSNIDWLDLAENQIEGNIPVSDDQGRPGLDLLLKAQHFHMGSNMLSGTIPAKLFNSSMHLKHVLFDHNQLEGNIPGTISTVSTLEVVRFDGNGLTGGVPSNLNNLGELSEIYLSHNKLNGSLPDFTGMNSLTYVDLSDNSFNASGIPSWVTSLPELTTVILATNLLSGALNLSNGYSNSLQLINLENNEITELDPQNKIPNFTLRLANNPICLESGASENSYCKVPVSIPSYSTPPNNCSPPQCSSDQISSPNCKCAFPYAGLLISRALSFSNYGNTSYYRELEQSLMDTFRNQSIPVDSVSLSNPSRNSTSDNFQLTLNVFPFQTDRFNTTGVLTIAFLLSNQIYKPPEFFSPYIFKGANYGYFGGEPEGSNSSSNTGVIVGAVLAVLIFVVLAFLAGMYAIRQKRRAKRSAELNPFANWEQNKNSGTAPQLKGARWFSFDELRKYTNNFSEANTIGSGGYGKVYRGTLPSGELVAIKRAARESMQGAVEFKTEIELLSRVHHKNLVGLVGFCFEEGEQMLVYEYIPNGTLMDSLSGKSGIWMDWIRRLKVALGAARGLAYLHELANPPIIHRDIKSSNILLDYHLNAKVADFGLSKLLVDRKRGYVTTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELVTARRPIEQGKYIVREVKRVMDTSKDLYNLQSILDPTIMKATRPKGLEKFVMLAMRCVKEYAAERPTMSEVVKEIENIIKLVGLNPNSESATTSETYEEASGGNAQYPYWEEDFSYSGSFPSRA 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0507 928 SUPERFAMILY Protein kinase-like (PK-like) 596 899 IPR011009 -
Ssu1g0507 928 PANTHER RECEPTOR-LIKE KINASE FAMILY PROTEIN, PUTATIVE-RELATED 2 912 - -
Ssu1g0507 928 PANTHER RECEPTOR-LIKE PROTEIN 55 2 912 - -
Ssu1g0507 928 Gene3D Ribonuclease Inhibitor 283 417 IPR032675 -
Ssu1g0507 928 Gene3D Ribonuclease Inhibitor 25 184 IPR032675 -
Ssu1g0507 928 ProSiteProfiles Protein kinase domain profile. 610 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0507 928 Pfam Protein kinase domain 611 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0507 928 ProSitePatterns Serine/Threonine protein kinases active-site signature. 730 742 IPR008271 GO:0004672|GO:0006468
Ssu1g0507 928 Gene3D Transferase(Phosphotransferase) domain 1 686 900 - -
Ssu1g0507 928 SMART serkin_6 610 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0507 928 ProSitePatterns Protein kinases ATP-binding region signature. 616 638 IPR017441 GO:0005524
Ssu1g0507 928 SUPERFAMILY L domain-like 44 372 - -
Ssu1g0507 928 Gene3D Ribonuclease Inhibitor 185 282 IPR032675 -
Ssu1g0507 928 CDD STKc_IRAK 616 882 - -
Ssu1g0507 928 Gene3D Phosphorylase Kinase; domain 1 580 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0507 Ssu-Chr1 11289846 11383037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0507 10 926 Receptor kinase-like Gene Family AT5G49760 53.602 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Ssu1g0507 Pkinase 4.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0507 - - gmx:100786172 1564.28