Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0500 ATGAAGAAAATTTCCAAGAGCAGCTGCAAGTCAGCATCACACAGACTCTTTAAGGACCAGGCAAGGAACCATGTTGATGATCTGCAGGTGATGTTCTTGGATCTGCAGTTTGCCAGGAAGGAGAGCCGAACGGTTGATGCTGCACTTCTCGAGGAGCAAGTCCATCAGATGCTTCGTGAGTGGAAGGCTGAGCTTAATGAGCCATCTCCTGCTTCTTCTTTGCAGCAAGGTGCTAGTCTTGGATCATTCTCCACCGATGTCTATAGGCTATTGCAGCTGTGTGAGGAGGAAGATGATGCCACTAGTCCATTAGTTGCACCTAAGCCTGAACCTAATGATCAGATTATCCAGGCTGGGGCTAAGGTGATATTCCAAGAGGGCCAACATCAACAGGATTTCCTATTACTTAACGAATGCAAACACTCCACTGTAGGAGTTCCCAACATGGCAGCTAACAACTTGGATGAACCTGCTTTAGAGTATCatcaatttgatttcaataagCACTTGGATCACAGCTTTTATGCTGGTAAAGGCTTTTGTGAGGAAGGTAGTGTTCCTCATATATCTAGCTATCTGCCAAGTGCCTGCCCTCCTCCTTCTGCTTTCTTAGGCCCACAATGTGCGCTTTGGGATTGTCCTAGGCCTGTTCAAGGGTTGGACTGGTGTCAAGACTATTGCAGTAGTTTTCATGCTGCTCTAGCTTTCAACGAAGGACCACCAGGAATGACCCCAGTTCTACGACCTGGGGGAATTGGACTCAAGGATAACTTACTTTTTGCTGCTCTTAGTGCAAAGGCACAAGGAAAAGTTGTTGGCATCCCAGAATGTGAGGGAGCAGCAACTGCAAAATCTCCATGGAATGCACctgAGCTCTTTGATGTTTGTGTTCTTGAGGGTGAGACTATTAGGGAGTGGCTTTTCTTTGACAAACCTAGAAGGGCATTTGAGAGTGGGAACAGAAAGCAAAGGTCACTGCCGGATTATAGTGGGCGTGGATGGCATGAATCTAGAAAGCAAGTGATGAATGAGTTTGGAGGGCTGAAGAGATCCTATTACATGGACCCTCAACCTCTGAGCCATTTTGAGTGGCACCTTTATGAGTATGAAATTAGCAAGTGTGATGCAAGTGCCTTATACCGGTTGGAACTAAAGCTTGTTGATGGGAAGAAGAGCTCAAAGGCAAAGATAATAACAGGTGATTCGGTTGCTGATCTGCAGAAGCACATGGGAAGCCTCTCTGCTGAGTTTCACTCTGACAATAACAAACGGTCTGCCAAAGGTAGAACCAAGCTTGGCATAGGAGGTGGTGTTTATTCAGCTTCCAACAGAGTTGCTCTACTAAATGCACCTTATCAATACGGCTTAACTGCACCATATGACTATCTTCTTGACAACACAAGTGACTATTATGTGACGTGA 1422 0.4529 MKKISKSSCKSASHRLFKDQARNHVDDLQVMFLDLQFARKESRTVDAALLEEQVHQMLREWKAELNEPSPASSLQQGASLGSFSTDVYRLLQLCEEEDDATSPLVAPKPEPNDQIIQAGAKVIFQEGQHQQDFLLLNECKHSTVGVPNMAANNLDEPALEYHQFDFNKHLDHSFYAGKGFCEEGSVPHISSYLPSACPPPSAFLGPQCALWDCPRPVQGLDWCQDYCSSFHAALAFNEGPPGMTPVLRPGGIGLKDNLLFAALSAKAQGKVVGIPECEGAATAKSPWNAPELFDVCVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLSHFEWHLYEYEISKCDASALYRLELKLVDGKKSSKAKIITGDSVADLQKHMGSLSAEFHSDNNKRSAKGRTKLGIGGGVYSASNRVALLNAPYQYGLTAPYDYLLDNTSDYYVT 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0500 473 PANTHER TRANSCRIPTION FACTOR VOZ1 1 473 IPR039277 GO:0006355|GO:0048578
Ssu1g0500 473 PANTHER TRANSCRIPTION FACTOR VOZ1 1 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0500 Ssu-Chr1 11197921 11200364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0500 3 472 VOZ-9 Transcription Factor Family AT1G28520 66.802 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF VOZ Ssu1g0500 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0500 - - gmx:100820163 851.277