Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0498 ATGCAAAAGATGGATGCTGAAGAGTTGTTTCAGGCTCAGGCCCATTTATATAACTACACTTATAGTTTCATTGGCTCCATGTGCCTCAAAAGTGCAGTTCACTTGGGCATACCAGACATAATCTTCAAGAATGGCCAACCCATTACTGTCCCTGAGTTGGTCTTGGCACTTCAGATCCACCCTACTAAATCAGGTTATGTATACAGGCTCATGCGCTTGCTGGTGCATGCTGGCTTCTTTGCCGCAACCAAGGTTGTAAAAGATGATAAGGAAGAAGTGGGGTATGATCTCACACCTTCCTCTAGGCTACTAGTTAAGGACAATGTTCCAACCTTGTCTCCTTTTGTTCGGGCAATGTTTCATCCCGCTCTAGTTCACTCATCAGAATTCTTGGCGGAGTGGTTTCACGGAAATGAGCTCACACCCTTTAACACTGCATTCGGCACGGGTTACTGGGACTATTTAAGCCAAAACCAAGAGTTTAATGGCCTCTTCAATGAAGCAATGATCAGTGATTCCGGGATGATGAATTTAGTGATCAAAAACTGCAAATCTGTTTTTGAGGGATTGAATTCATTGGTTGATGTTGGGGGTGGTAAAGGAGCTGTAGGTAGGATTGTTTCTGAGTCACTGCCTAATTTGCAATGGACTGTGCTAGATCTTCCACATGTGGTTGAAAATTTGCTTGACAGCaccaatttgaaatttgttgggGGTGACATGTTTCGTTCTATTCCTTCAGCAGATGCCATTCTTCTTAAGTTAGTATTGCACGCTTATAGTGATGAAGAGTGCGTTAAGGTACTGAAGAAATGCAGAGAAGCTATTTCAAACAAGGGCAAGGAAGGGAAAGTAATTATCATAGACATAGTGATCggtgaaaagaatgaaaatcacGTTTTGACAGAAGCAAAGCTGTTTTTTGATATGTTAATGATGGTTCTGGTCaatggaagagagagagaagaaaaagaatgggaGAAACTCTTCTTAGAAGCTGGATTCAGTCATTATAAGATAACACCCATCTTTGGTATGAGGTCGCTTATTGAAGTTTATCCTTGA 1065 0.3906 MQKMDAEELFQAQAHLYNYTYSFIGSMCLKSAVHLGIPDIIFKNGQPITVPELVLALQIHPTKSGYVYRLMRLLVHAGFFAATKVVKDDKEEVGYDLTPSSRLLVKDNVPTLSPFVRAMFHPALVHSSEFLAEWFHGNELTPFNTAFGTGYWDYLSQNQEFNGLFNEAMISDSGMMNLVIKNCKSVFEGLNSLVDVGGGKGAVGRIVSESLPNLQWTVLDLPHVVENLLDSTNLKFVGGDMFRSIPSADAILLKLVLHAYSDEECVKVLKKCREAISNKGKEGKVIIIDIVIGEKNENHVLTEAKLFFDMLMMVLVNGREREEKEWEKLFLEAGFSHYKITPIFGMRSLIEVYP 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0498 354 PIRSF O-mtase 1 354 IPR016461 GO:0008168
Ssu1g0498 354 PANTHER O-METHYLTRANSFERASE 5 354 IPR016461 GO:0008168
Ssu1g0498 354 Gene3D - 1 104 IPR036388 -
Ssu1g0498 354 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 353 IPR029063 -
Ssu1g0498 354 Pfam O-methyltransferase domain 131 336 IPR001077 GO:0008171
Ssu1g0498 354 Pfam Dimerisation domain 27 75 IPR012967 GO:0046983
Ssu1g0498 354 SUPERFAMILY "Winged helix" DNA-binding domain 7 108 IPR036390 -
Ssu1g0498 354 PANTHER ASMT2 5 354 - -
Ssu1g0498 354 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 17 354 IPR016461 GO:0008168
Ssu1g0498 354 Gene3D Vaccinia Virus protein VP39 105 354 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0498 Ssu-Chr1 11174312 11175478 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0498 27 352 Monolignol Biosynthesis Gene Families AT5G54160 34.524 1.90e-49 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0498 K22588 - qsu:112018723 499.975