Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0491 ATGGGGTTGATCGATCTGAACACCACAGAGGATGATGAAACTCCGTTAtctacttcttctttttcttcctcttcttcttctcactCCGGGATAAGCACTTCTGCTTCGGCCGCGGTTCCTCCTCCTTCTGTGTGCTTGGAACTGTGGCACGCTTGTGCGGGGCCTTTGATCTCTCTTCCGAAGAAAGGAAGTGTTGTTGTGTACTTGCCACAGGGACACTTCGAGCATGTTCAGGATTTTCCGGTCACTGCTTATAATAATATCCCACCCCATGTGTTCTGTCGTGTTCTTGATGTCAAGCTCCATGCAGAGGAAGGGAGCGATGAAGTGTATTGCCAAGTGTTGTTGGTTCCTGAAAGTGAGCAAGTGGAGCAAAGCTTGAGGGAAGGGGAAATTGATGCTGATGGGGAAGAGGAGGATACTGAAGCTATAGTGAAATCAACAACTCCCCACATGTTCTGCAAGACTCTGACAGCTTCAGACACCAGCACTCATGGTGGATTCTCGGTGCCTCGTCGAGCAGCTGAAGATTGCTTTCCTCCCCTgGATTACAGTCAACAGAGGCCTTCACAGGAGCTTGTGGCAAAGGATCTTCATGGCCTGGAATGGAGGTTTCGTCATATATACAGGGGCCAACCCCGGAGGCATTTGCTCACAACTGGGTGGAGTGCGTTTGTGAACAAAAAGAAGCTTGTTTCTGGAGATGCTGTGTTGTTTCTTAGGGGTGAGGATGGAGTACTGAGATTAGGGATTCGTAGGGCAGCTCAGTTGAAAAGTGCTGGTTCCTTTACAGTTCCCTCTGGTCAGCAATTGAATCCTGCAACTCTTATGGATGTTGTTAATGCTTTGTCTACAAGATGTGCATTTGGTGTTTGCTACAATCCAagGGTCAGCTCTTCGGAGTTCATCATACCTGTTCACAAATTCATAAAGAGCCTTGATTGTTCTTATTCTGTTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATGCTGCAGAGCGAAGATGCACTGGATTAATTGCTGGAATTGGTGATGTCGATCCTGTTAGATGGCCTGGATCAAAATGGAGATGCCTACTGGTAAGGTGGGATGACATAGAAGCTGCTAGGCACAATAGGGTTTCCCCATGGGAAATTGAGCCATCTGGTTCTGCTTCAGGTTCCAGTAACTTGATGGCAGCTGGTTTGAAGAGGACCAGGATTGGATTGACTTCAGCAAAGCTGGAATTTCCCGCTCCCAATGGGATTGGAACATCAGACTTTGGGGAATCATTAAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATACTCCCTTTGATGGAATTAATGCTCGGAGTCCTCGGTTATGCGAGTTAGGCAGGTGCTATCCTGGTTCAAACTGTTCTGGGATTCCTGCATCAGGGAATAACATCAGGATGCCGCATCCGACATCTGATTTTTCCTGCAATGGCATAGGCTTTAGTGAATCTTTCCGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTCTACCAAGCCAACCGTATGGAAGAGCTTACTCAACCGAGGAGGCTCGGGGAAATGGTCGCTTTGGACTTTATGATGGTTATCAATTGCTTAACTCCAGAAATGGATGGTCTGGCCAGATGCATGACAACGCTCCACATTTGCATGCATCTGTTACGCCTGCGCAAGTGTCATCTCCATCATCTGTGTTGATGTTCCAGCAAGCAGTTAATCCAGTTTCAAACTGTGATTATAACAACAAACGTAATAAGCAAATGGAGGGTAGAGTCCGTTACCAAGGTTTATACACATCTGAAGTGAAAGGTAGAACATTTGCATCTTCCCCATCTGATGCAATTCCTTTTGGTATGTTTGATGTTCATAATCAGTTGGGTAGTTCACGGTCACACGATTCAGCGTCGGCATTGAGAAGCAGTCAAGAGTTGGCTTCCTCATGTAAAAGTAGTTGCAGGCTCTTTGGTTTTTCATTGACTGAGGACTCACACGTTGCAAATGAAGAGGCTGATGCCTCTACCGTCACTCGTCCATTGAATTCAGGACCTTCCTTTCCTAGACTTGTTGAAGATGAGTTCCCGAGTAAGGCGGTTGGAAGTAACTGCACCAAAGGAGTACTGCAGTATTGA 2142 0.457 MGLIDLNTTEDDETPLSTSSFSSSSSSHSGISTSASAAVPPPSVCLELWHACAGPLISLPKKGSVVVYLPQGHFEHVQDFPVTAYNNIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPESEQVEQSLREGEIDADGEEEDTEAIVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGVLRLGIRRAAQLKSAGSFTVPSGQQLNPATLMDVVNALSTRCAFGVCYNPRVSSSEFIIPVHKFIKSLDCSYSVGMRFRMRFETEDAAERRCTGLIAGIGDVDPVRWPGSKWRCLLVRWDDIEAARHNRVSPWEIEPSGSASGSSNLMAAGLKRTRIGLTSAKLEFPAPNGIGTSDFGESLRFRKVLQGQEILGVNTPFDGINARSPRLCELGRCYPGSNCSGIPASGNNIRMPHPTSDFSCNGIGFSESFRFQKVLQGQEILPSQPYGRAYSTEEARGNGRFGLYDGYQLLNSRNGWSGQMHDNAPHLHASVTPAQVSSPSSVLMFQQAVNPVSNCDYNNKRNKQMEGRVRYQGLYTSEVKGRTFASSPSDAIPFGMFDVHNQLGSSRSHDSASALRSSQELASSCKSSCRLFGFSLTEDSHVANEEADASTVTRPLNSGPSFPRLVEDEFPSKAVGSNCTKGVLQY 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0491 713 Pfam B3 DNA binding domain 153 254 IPR003340 GO:0003677
Ssu1g0491 713 Gene3D - 316 390 - -
Ssu1g0491 713 CDD B3_DNA 151 253 IPR003340 GO:0003677
Ssu1g0491 713 PANTHER AUXIN RESPONSE FACTOR 35 713 - -
Ssu1g0491 713 MobiDBLite consensus disorder prediction 10 34 - -
Ssu1g0491 713 Gene3D - 151 255 IPR015300 -
Ssu1g0491 713 ProSiteProfiles B3 DNA-binding domain profile. 153 255 IPR003340 GO:0003677
Ssu1g0491 713 Pfam Auxin response factor 280 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu1g0491 713 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 35 713 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu1g0491 713 SMART B3_2 153 255 IPR003340 GO:0003677
Ssu1g0491 713 MobiDBLite consensus disorder prediction 1 34 - -
Ssu1g0491 713 SUPERFAMILY DNA-binding pseudobarrel domain 146 259 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0491 Ssu-Chr1 11039923 11045228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0491 152 549 B3 DNA Binding Superfamily AT2G33860 55.362 6.51e-144 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ssu1g0491 B3 1e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0491 K14486 - gmx:100789906 1257.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0491 1 11039923 11045228 Ssu1g0491 1 11039923 11045228 ECH