Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0485 ATGACATGGTGcaatgactctgatgaggagAGGGGCATTGAATCGATAACGCCAACTATTACTATTACTTCTAGCACTGATGCTACTGACATAAAGCTCACCGAAGAAATTCGAGCCATAACATGCCCCTCTTGCGGCCATAACATTGAATTCAAAGATCAGGGTGGAATTCACGACTTGCCGGGGTTACCAGCTGGAGTGAAATTTGATCCGAATGACCAAGAAATACTAGAGCATTTAGAGGCAAAAGTGGCGTCTGATGCATGCAAGCTTCATCCCCTTATTGATGAGTTCATACCGACACTTGAAGGGGAGAATGGGATCTGTTATACACACCCAGAAAAGCTACCAGGAGTTAGCAAAGATGGACAGATCCGCCACTTCTTTCACAGGCCCTCAAAAGCATACACAACTGGaacaaggaaaagaagaaaggttaACACTGAAGAGGAAGGAAGTGAAACAAGATGGCACAAAACGGGAAAAACTAGAGCAGTTTTTGCAGCTGGTGGTGCAataaaaggttttaagaaaatacTAGTACTCTACACCAACTATGGCAGGCAAAGGAAGCCTGAGAAGACTAACTGGGTGATGCATCAATACCATCTTGGCAGTaatgaagaagagaaagatggaGAATTAGTTGTTTCAAAGGTCTTCTACCAGACTCAACCTAGACACTGTGGTAATCCCATTATCATAAAGGATCCGTacgaaaaaatattgaatgatgGAAGTGGCCACGACAGCAATGCTATACCTAAAACTGCAGCTCTTGTTGATTGCTACAGTGTTCCTTACATAAATTATGATCATGTCCATATGAGTCATAATATGGAAAGCTCCCCACAACTAATTATTCCCAGCTCGGTTGTCCAAGTTGATGGTTCTTATATTCGCTTAGCAACGGAAGCAAAGAAAGCAAGATTTGAAAGTAACACTGGGAAGAGCTTCTAG 960 0.3885 MTWCNDSDEERGIESITPTITITSSTDATDIKLTEEIRAITCPSCGHNIEFKDQGGIHDLPGLPAGVKFDPNDQEILEHLEAKVASDACKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKVNTEEEGSETRWHKTGKTRAVFAAGGAIKGFKKILVLYTNYGRQRKPEKTNWVMHQYHLGSNEEEKDGELVVSKVFYQTQPRHCGNPIIIKDPYEKILNDGSGHDSNAIPKTAALVDCYSVPYINYDHVHMSHNMESSPQLIIPSSVVQVDGSYIRLATEAKKARFESNTGKSF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0485 319 Pfam No apical meristem (NAM) protein 64 204 IPR003441 GO:0003677|GO:0006355
Ssu1g0485 319 Gene3D NAC domain 72 227 IPR036093 GO:0003677|GO:0006355
Ssu1g0485 319 SUPERFAMILY NAC domain 57 223 IPR036093 GO:0003677|GO:0006355
Ssu1g0485 319 PANTHER NAC DOMAIN-CONTAINING PROTEIN 10 1 298 - -
Ssu1g0485 319 ProSiteProfiles NAC domain profile. 63 223 IPR003441 GO:0003677|GO:0006355
Ssu1g0485 319 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 298 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0485 Ssu-Chr1 10906289 10910229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0485 1 233 NAC Transcription Factor Family AT4G28500 70.940 1.35e-120 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu1g0485 NAM 2.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0485 - - gmx:100809389 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0485 1 10906289 10910229 Ssu1g0485 1 10906289 10910229 ECH