Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0484 atgaaCCACGTTGAGCATATCGCTTATGATATGGTCATGATCACTCTATCCATATCTCTCATCGTTCTTGGTGTCGTCCTCTTCCTTGCTTGCAAGAAGAAACCGGTTGAATCCGAAGAAACTCTTCCTGTGAAGTTTTGTGCTCGTGCATACCCCCTGATGGAAATTGATGCTGCCACCGATGGCTTCAATCATAGGAGAATTATTGGCCAGGGTCGCTTAGGAACTGTGTATGCAGGGACACTAGAGAAAGAAGAACTTGTAGCTGTCAAAAGGATTCACCCGGTTCTTGTGTTGAGCAATGCAGGGTTTGGTTTCTCATCCGTGTTGAAATGGCTCTCTTTGGCTCAGCACCCCAACGTAGTTCCAATCATAGGATTCTCAGAAGGACCGGGTGAGAGAGTTATTTTGATGGAGTTTGTGCACATGGCAAGCCTGGACTTCTACTTGCATCAAAACCCAGATGGGGCTTCACTTTTGGATTGGAACAAGAGGTTCAGGATTGCAGCTGGAGCAGCTAGAGGGCTTCAGTACTTGCATGAAGTGGTGGCACCAAACATTGTACATGGGTGTGTTAAGTCCTCTAATATTCTCATTGATGTCAACTTCTGTGCTAGGATTTCTGATTATGGACTTAACTTTCTGGCTCCTGTGGAGAAGAGAGGGCCAGTGGGTTATGTGGATGATGAGTTTTGGAGTGAAAGAAGGGGTGGTGGAGCTACCAAGGAAAGTGATGTTTACGGGTTAGGGGTGGTCCTGTTGGAGCTTTTAAGTGGGAAAGGGTGTGAGGGAGGGTTGTTGGTGAAGTGGGCATTGCCTTTGATCAGGGAAACGAGTTTTAGTGAACTTTTGGATCCTAGGTTGGTGATTCCTTCTGACATGAAGCCTCTGGCTAGACTAGCCAAAGTTGCTTCAGCATGTGTTGGTAATTCGCGGAAATGTAGGCCTTGCGTGGCTCAAGTGGCAACCATTTTGAATAACTTAGAAACGGAAGTGTGCCTCTGA 1005 0.4647 MNHVEHIAYDMVMITLSISLIVLGVVLFLACKKKPVESEETLPVKFCARAYPLMEIDAATDGFNHRRIIGQGRLGTVYAGTLEKEELVAVKRIHPVLVLSNAGFGFSSVLKWLSLAQHPNVVPIIGFSEGPGERVILMEFVHMASLDFYLHQNPDGASLLDWNKRFRIAAGAARGLQYLHEVVAPNIVHGCVKSSNILIDVNFCARISDYGLNFLAPVEKRGPVGYVDDEFWSERRGGGATKESDVYGLGVVLLELLSGKGCEGGLLVKWALPLIRETSFSELLDPRLVIPSDMKPLARLAKVASACVGNSRKCRPCVAQVATILNNLETEVCL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0484 334 Pfam Protein tyrosine and serine/threonine kinase 66 323 IPR001245 GO:0004672|GO:0006468
Ssu1g0484 334 ProSiteProfiles Protein kinase domain profile. 63 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0484 334 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 1 333 - -
Ssu1g0484 334 SUPERFAMILY Protein kinase-like (PK-like) 40 325 IPR011009 -
Ssu1g0484 334 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 333 - -
Ssu1g0484 334 PIRSF ILK 31 333 - -
Ssu1g0484 334 Gene3D Phosphorylase Kinase; domain 1 29 140 - -
Ssu1g0484 334 Gene3D Transferase(Phosphotransferase) domain 1 142 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0484 Ssu-Chr1 10866332 10867336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0484 48 325 Receptor kinase-like Gene Family AT3G59420 39.041 1.86e-53 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Ssu1g0484 PK_Tyr_Ser-Thr 3.6e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0484 - - vun:114187437 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0484 1 10866332 10867336 Ssu1g0484 1 10866332 10867336 ECH
Ssu5g1643 5 50498748 50499752 Ssu1g0484 1 10866332 10867336 PCT