Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0481 ATGACCCGTCTCAAACAGATCGAGCTGTACAACAACTCCCTCTCCGGTGAGTTGCCTCGGGGAATGTCCAACCTCACTTCACTGAGGCTCATTGATTTGTCTATGAACCATTTGACCGGGCCCATTCCCGATGAGTTGTGTCGTCTGCCTCTCGAGAGTCTTAACCTCTACGAGAACCGCTTCACCGGCCGGTTGCCGCCGAGCATCGCCGGCTCGCCGAACCTCTACGAGCTCAGGCTGTTCGGGAACAAGCTCGCCGGGACACTGCCGGAGAGTCTCGGGAAGAATGCTCCCCTGCGGTGGCTTGACGTCTCCACCAACCGGTTCTCCGGCGGGATTCCGGCGAGCCTCTGCGAGCGCGGCGAGTTGGAGGAGATTCTCATGATTGAAAACTCGTTTTCCGGGGAGATTCCGGCGAGTTTGGGCGCGTGCCGGAGCTTGGAGCGGGTCAGGTTCGGTTCGAACCGGTTGTCCGGCGAGGTCCCGGCGGGGCTGTGGGGTCTTCCGCACGTGTATTTGCTTGAGCTGGTGGATAACTCGTTTGGTGGCTCAATCGCGAGGACCATTGGTGGTGCGAGGAATTTATCGTTGTTGAATTTGTCGAACAACAATTTCTCCGGTGTGATCCCCGACGAGATTGGCTGGTTGGAGAATCTCCAGGAGTTTTCCGGTGGTAATAACAAGTTCAATGGCTCGTTGCCTGGGAGTATTGTGAATCTTGGGCAGCTTGGGACTCTTGATCTTCACAACAATAAGCTCTCTGGGGAGCTTCCCAAGGGGATTCAATCGTGGAAGAAACTGAATGACTTGAATTTGGCTAATAATGAGATTGGTGGGAAGATTCCTGATGAAATTGGGAGtttgtttgtgttaaattttctTGATCTTTCCAACAACCAATTTTCCGGGGATGTTCCTCTTGGGTTGCAGAATTTGAAGCTCAATCAGCTCAATTTGTCTTATAATAGGCTTTCTGGAAGGCTTCCCCCACTGCTGGCTAAGGATATGTATAAAGCTAGTTTTATTGGCAACCCTGGTTTGTGTGGGGATTTCAAAGGTTTGTGTGATGGCAAAGGGGAGGATAAGAGTAAGGGTTTTGTGTGGATACTGAGAACTATTTTTATAGTTGCCACTTTGGTGTTTGTTGTCGGGGTGGTCTGGTTCTACTTCAGGTACAAGAATTTCAGGAATGCTGGGAAACCTGTTGATAAATCGAAGTGGACGTTGATGTCGTTTCATAAACTGGGTTTTAGTGAAGATGAGATCTTGAATTGCCTTGATGAAGATAATGTTATAGGAAGCGGGTCGTCGGGGAAGGTTTACAAGGTTGTGCTTAGCAGCGGGGAAGCTGTTGCTGTGAAGAAGATATGGGGCGGAGTGAGGAAGGCCATAGATAGTGGGGATGTTGACAAGGGTCAGTTTCATCAAGACAGTGCTTTTGATGCAGAGGTTGAAACACTGGGCAAAATTAGGCACAAGAACATTGTCAAGCTGTGGTGTTGCTGCACCACTAGGGATAGCAAGCTATTGGTTTATGAGTATATGCCAAATGGTAGCCTGGGGGATTTGCTACATAGCAATAAAGGAGGGTTGTTGGATTGGCCAACTAGGTATAAGATAGCTGTTGATGCTGCAGAGGGCCTCTCTTATTTGCATCATGACTGTGTTCCTTCAATTGTTCATAGAGATGTGAAATCTAATAACATCTTGTTGGATGGGGACTTTGGTGCGAGAGTGGCAGATTTTGGAGTAGCTAAGGTAGTCGATGCCACTGGGAAAGGAACTAAATCCATGTCCATCATAGCTGGGTCTTGTGGATACATTGCACCAGAATATGCATACACGCTTAGAGTGAATGAGAAGAGTGACATATATAGTTTTGGTGTTGTCATACTTGAGTTGGTTACTGGAAGGCGGCCTATAGACCCTGAATTTGGGGAAAAAGATTTGGTTATGTGGGCGTGCACCACCTTGGATCAGAAAGGCGTGGAGCATGTGCTCGACTCCAGGCTTGACTCTTGTTTCAAAGAAGAAATTTGCAAGGTCTTCAACATTGGCCTCATGTGCACTAGTCCTCTTCCAATCAACCGGCCTGCAATGAGAAGAGTGGTGAAGATGTTACAAGAGGTGGGCACAGAGAACCAAACGAAACCTGCCAAGAAAGATGGAAAGTTGTCCCCTTATTACTATGACGATGGGTCAGATCATGGAAGTGTTGCTTAG 2223 0.4809 MTRLKQIELYNNSLSGELPRGMSNLTSLRLIDLSMNHLTGPIPDELCRLPLESLNLYENRFTGRLPPSIAGSPNLYELRLFGNKLAGTLPESLGKNAPLRWLDVSTNRFSGGIPASLCERGELEEILMIENSFSGEIPASLGACRSLERVRFGSNRLSGEVPAGLWGLPHVYLLELVDNSFGGSIARTIGGARNLSLLNLSNNNFSGVIPDEIGWLENLQEFSGGNNKFNGSLPGSIVNLGQLGTLDLHNNKLSGELPKGIQSWKKLNDLNLANNEIGGKIPDEIGSLFVLNFLDLSNNQFSGDVPLGLQNLKLNQLNLSYNRLSGRLPPLLAKDMYKASFIGNPGLCGDFKGLCDGKGEDKSKGFVWILRTIFIVATLVFVVGVVWFYFRYKNFRNAGKPVDKSKWTLMSFHKLGFSEDEILNCLDEDNVIGSGSSGKVYKVVLSSGEAVAVKKIWGGVRKAIDSGDVDKGQFHQDSAFDAEVETLGKIRHKNIVKLWCCCTTRDSKLLVYEYMPNGSLGDLLHSNKGGLLDWPTRYKIAVDAAEGLSYLHHDCVPSIVHRDVKSNNILLDGDFGARVADFGVAKVVDATGKGTKSMSIIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRRPIDPEFGEKDLVMWACTTLDQKGVEHVLDSRLDSCFKEEICKVFNIGLMCTSPLPINRPAMRRVVKMLQEVGTENQTKPAKKDGKLSPYYYDDGSDHGSVA 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0481 740 Gene3D Phosphorylase Kinase; domain 1 410 514 - -
Ssu1g0481 740 MobiDBLite consensus disorder prediction 715 729 - -
Ssu1g0481 740 Gene3D Ribonuclease Inhibitor 1 357 IPR032675 -
Ssu1g0481 740 SUPERFAMILY L domain-like 2 331 - -
Ssu1g0481 740 SUPERFAMILY Protein kinase-like (PK-like) 420 707 IPR011009 -
Ssu1g0481 740 ProSitePatterns Protein kinases ATP-binding region signature. 432 455 IPR017441 GO:0005524
Ssu1g0481 740 MobiDBLite consensus disorder prediction 711 740 - -
Ssu1g0481 740 ProSiteProfiles Protein kinase domain profile. 426 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0481 740 SMART serkin_6 426 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0481 740 Gene3D Transferase(Phosphotransferase) domain 1 515 732 - -
Ssu1g0481 740 PANTHER LRR RECEPTOR-LIKE KINASE 1 722 - -
Ssu1g0481 740 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 722 - -
Ssu1g0481 740 Pfam Protein kinase domain 428 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0481 740 ProSitePatterns Serine/Threonine protein kinases active-site signature. 559 571 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0481 Ssu-Chr1 10849155 10851779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0481 1 740 Receptor kinase-like Gene Family AT1G28440 70.912 0.0 1094
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu1g0481 Pkinase 1.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0481 - - gmx:100776936 1363.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0481 1 10849155 10851779 Ssu1g0481 1 10849155 10851779 ECH