Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0476 ATGGAGGCCGAGGCAGAGAACAACGCGCAGAAGGGAGACGAAAACAGCAatgagaacaacaacaacaacaacaatgaaagcAACAGCAAAATTGGGAATTCGAGTGAGGGTCAGAGCAAGCCCAAGCGTCAGATGAAGACGCCGTTTCAGCTTGAAACGCTCGAGAAAGCTTACGCTGtGGAGAATTACCCGTCGGAGACGATGAGAGCGGAGTTGTCGGAGAAGTTGGGGCTGTCCGATCGGCAGTTGCAGATGTGGTTCTGTCACCGGCGgttgaaggaaaagaaagacTTGCCGTCGAAGAAGCCGCGTAAGGCGGCGGCGTTGCCGGATTCTCCGGCGGCGGAGGAGCCCAGATTGGGCCCTGAAGTGGGCGCCGAATACGGATCTGGGTCGGGTTCGGGGTCCAGCCCATTTACCCGTTCGGAGTTGAGGAATGTGGTGCCTCGGGGGTACTATGAGTCGCCACAGACTATAATGGAGCTTAGAGCAATTGCTTGTGTGGAGGCTCAGTTGGGGGAGCCTTTGAGGGAAGATGGACCTATTCTTGGAGTGGAGTTTGATCCGTTGCCGCCAGATGCATTTGGGGCACCCTTAGCTGTTACGGAACAACAAAAGCGGCCTAGTCTTACTATGACagtaaaatatatgaaagacaCGATGTTAGGACAAATAAGGCAGTAG 684 0.5 MEAEAENNAQKGDENSNENNNNNNNESNSKIGNSSEGQSKPKRQMKTPFQLETLEKAYAVENYPSETMRAELSEKLGLSDRQLQMWFCHRRLKEKKDLPSKKPRKAAALPDSPAAEEPRLGPEVGAEYGSGSGSGSSPFTRSELRNVVPRGYYESPQTIMELRAIACVEAQLGEPLREDGPILGVEFDPLPPDAFGAPLAVTEQQKRPSLTMTVKYMKDTMLGQIRQ 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0476 227 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 5 215 IPR044977 GO:0006357
Ssu1g0476 227 SUPERFAMILY Homeodomain-like 28 96 IPR009057 -
Ssu1g0476 227 CDD homeodomain 42 96 IPR001356 GO:0003677
Ssu1g0476 227 Pfam Homeodomain 40 96 IPR001356 GO:0003677
Ssu1g0476 227 Gene3D - 12 96 - -
Ssu1g0476 227 ProSiteProfiles 'Homeobox' domain profile. 37 97 IPR001356 GO:0003677
Ssu1g0476 227 MobiDBLite consensus disorder prediction 12 46 - -
Ssu1g0476 227 MobiDBLite consensus disorder prediction 97 141 - -
Ssu1g0476 227 PANTHER HOMEOBOX DOMAIN PROTEIN 5 215 - -
Ssu1g0476 227 MobiDBLite consensus disorder prediction 1 50 - -
Ssu1g0476 227 SMART HOX_1 39 101 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0476 Ssu-Chr1 10785368 10788440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0476 33 208 Homeobox Transcription Factor Family AT1G28420 55.612 2.53e-58 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Ssu1g0476 Homeodomain 4.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0476 - - gmx:100777465 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1649 5 50601178 50611381 Ssu1g0476 1 10785368 10788440 PCT