Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0475 ATGGCTAAAGAATCTATGGAGCTTATTGAGGATGAACAGCTGGAATTGATGGAGTTGGCTGCTGCAAGCAAGGGGCTTTCCTCTATTATTCATATTGATCTTGATACTTTGCAAAACCTTGAATCATTTAGGGATTCACTGTGTGTATTTCCACCCAAAAGTGTAAAGCTGAGAAAACCATTTGCTATCCAGCCCTGGATCAACTCAGAACAGAATGTTGGCAACCTTCTCATGGTTTGGAAATTCTTGATTACTTTCGCTGATGTTCTTGACTTATGGCCTTTTACTCTTGATGAGTTTGTTCAGGCATTTCATGACTATGATTCTAGATTGTTGGGTGAGATACATGTTGCTCTTCTCAAGGTGATAATAAAAGACATTGAAGATGTTGCAAGAACACCTTCTACAGGATTAGGGATGAACCAGAACGGAGCTGCTAATCCTGGAGGTGGCCATCCAGAGATTGTGGAAGGAGCATATGCATGGGGCTTTGACATACGAAACTGGCAGAAGAACTTAAATCAATTGACATGGCCAGAAATTTTCCGACAGTTAGCACTGTGTGCAGGATTTGGACCGCAGCTGAAGAAAAGAAGTGTTACATGGTCATATGCAATTGATAAAGACGAgGGAAAAAGTTGCGAAGATATCATTTCTACACTCCGTAATGGTTCAGCAGCTGAAAGTGCCGTGGCCAAAATGCAAGAGAGAGGTCTGCTAGCTCCTCGAAGATCAAGGCACCGGTTAACTCCTGGCACAGTTAAATTTGCAGCTTTTCACGTTCTCTCGCTGGAGGGTAGCAAGGGTTTGACAGTACTAGAGCTTGCTGAAAAAATTCAGAAATCTGGTCTTCGGGACCTGACAACCAGCAAGACACCTGAAGCATCAATTTCTGTTGCTTTGACAAGAGACACTAAATTGTTTGAAAGAATAGCCCCATCAACATATTGTGTAAGAACTGCATTCAGAAAGAATCCTGCTGATGCTGAGTCCATTCTTTCAGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGGTGAAGATGCCGACGATGTTGAAAGAGAAGAGGAGTCAGAAAGTGATGAAGTTGATGAGGATCCTGAAGATGATGATTTAGTAAATCCTTCAATTGCAAACCAAAATTCGGAACAGTATGATGACACAAACATTTGCTCAtcaaatggaaaagaaattttgGGTCGCAATGTTGATCTTATTCAAAATGACTTTGATACGAATCTACCTTGTTTTCCTAAGAATGGTTCCACAGATGCTGATTGTCCCAGTTCTGTCAGCAGGCAACCTGCTCCTTGTAAAGATTTAAATGCTGGAAATCTTGATCAAGATAATATGGAAATAGATGAAAGCAAGTCTGGAGAGTCCTGGATTCTAGGGCTCGCTGAAGGAGAATTTTCTGATCTCAGCATAGAGGAGCGTCTAAATGCTCTTGTTGCATTGGTTGGTGTGGCAAATGAAGGAAATTCAATCCGTGTTGTTCTAGAGGATCGACTGGAATCAGCAAATGCTCTGAAGAAACAAATGTGGGCAGAAGCACAGATAGATAAAGTTCGTCTGAAAGATGATAATATTAGTAAATCAGATTTTCCATCACTTACTGGGCATAAGGTTGAAACACAATACACATATCCAGCTGTGGAGGGAAACCAAAGCCCAATGCTTGacattaatattaacaatattaataatgaagCATCACCCAGTACTGCAGAAAACCAAAAAGGAGCTCCTGTTGCACAGAGCATGCTTATGGAGAAGTCCTCATCAATTCAAGATTTCGGTACAGGTACTGGTGCAGACATCCCTCAGACTCAGGTACCTGTACAGTATTCGAAAAGATCACGTTCACAGTTGAAATCTTATATTGCCCACATAGCAGAGGAGATGTATGTCTACAGATCTTTACCCCTTGGCCAAGATCGCAGACGTAATCGATATTGGCAGTTTGTTGCTTCTGCTTCTAGCAATGATCCTGGTTCTGGCAGGATCTTTGTTGAATATCATGATGGCAAGTGGAGGCTTATTGATTCTGAAGAGGCCTTTGATGCTCTTTTGACATCATTGGATTCACGTGGGATCAGGGAATCTCATTTGCGCTTAATGTTGCAAAAGACTGAGAATtcctttaaagaaaatgttCGAAAGAAGAATACACAATGTGCCAAAAATGGAAGCAGAGGCAAAGTTTCTATTAAAATTGAAGCTGATGAACCATATTGTATCCCTGACCACAATGCTGGATCTGACAGTCCTAGCAGTACCCTTCATGACTTGAACCCTGATACATCTGAAAATTCATCATCCTTCAAAATTGAGCTTGGGAAAACTGAGAGTGAGAAGAAAGCTGCCTTGAGAAGGTATCAAGATTTTCAGAAGTGGTTGTGGAAAGAATGCTATAATTCATCGGTTTTATGTGCAATGAAATATGGGATAAAGAGATGCAAACCTCAGATGGACATTTGTGATATCTGtttcaatctttattttgttGAAGACTCCCATTGCAATTCCTGCCATCGGACTTTTCCTTCGAATAatggatttaatttttctaaacatgCATTTCAATGTCAAGACAAGTTATCCAAAGATAATTGTGTTTTGGAATATTCTCTTCCCTTGCGGACAAGATTGCTTAAGGTCTTGTTGGCTTGTATGGAGGTATCTGTTCTATCTGAAGCATTTGGAGCAAGTTGGACTGATGATATTAGGAAGCACTGGGGCGTTAAGTTGAGCAAATCATCTTCTGTTGAGGAACTTTTACAGATATTGACCCTATTTGAGAGAGCACTACGGCGAGATTTTCTGTCATCGAACTTCTCTACAACAGATGAATTGTTGGGATCAAGCAGTATGTCAGAAAGTTCTGTGCAGGCTTCAACTGATCCTGAATCTGTTGCTGTGCTTCCATGGGTTCCACTAACCACTGCAGCTTTGTCTCTCAGGCTTTTTGAGATTGATTCGTCCGTCAGCTATGTAAAGCTTGAGAAACTTGAGCCTTGTGAGGAGAAAGAAGCAAGAGAATACATAAAGCTTCCATCAAGATATACTCACACCAAATCTAATAGGGAGGTTGAACCAGCAGAATTCGACCATGATGAATTCACTAAAGATAAATCTGTTCCTAAGAAAATTGTACGAAGTGGCAATAAACGTAGACGAGGGACTAATGAACAAGGACGGGGTAAAAAGCTGGCTAAAAGAGTGTACAATTCCAAACGAGATGGTGGTCGCAGGAATGCTAAGGTCACTGACAATCTAAGTCACAAATTAAAACATCAGGGACGAGGAACACAAGGACAAGGTGCTGGGCGAGGTCGCCGAACAGTAAGGAAACGGAGAGTGGGAAAGAGAGCTGTTGAAGATTTGTTGCTGGGCCATACGACAGCCAGTCATAGCTCCAAGATTGATAGCGAGCCATTGAGAAACTTGGATGAGGAATGGGATGGAGAAAAGGCAAGTCCCATGACTCCTGTACACGTTGGGGTTGCTGAACATAGTAACAGTGCTGAAGAGGTGGAATCTGATGATGACAATGCTCAAGCTGTGGAATATGATCAAGGAAACTGGGAGGTAGGTTTTAATGGTGTTCCCCCCAACGGATGGAGTAGGGATTTGGTTGGAATGAGTGACGAAGATGTGGATGCTTTTGAAGATGACAATGACAATGACAATGACATTGAAGAGAATGAAGAGGAGGATTCAGAAGCAGATGTTATGAGTGAGGGTTCAGATGGAATGACAAATAGAGTAGTAAATGTTGGAGGCTCAGACTCGGCTTCGTCTGAAGATTCTTCTGATTAG 3834 0.4074 MAKESMELIEDEQLELMELAAASKGLSSIIHIDLDTLQNLESFRDSLCVFPPKSVKLRKPFAIQPWINSEQNVGNLLMVWKFLITFADVLDLWPFTLDEFVQAFHDYDSRLLGEIHVALLKVIIKDIEDVARTPSTGLGMNQNGAANPGGGHPEIVEGAYAWGFDIRNWQKNLNQLTWPEIFRQLALCAGFGPQLKKRSVTWSYAIDKDEGKSCEDIISTLRNGSAAESAVAKMQERGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYCVRTAFRKNPADAESILSEARKKIQIFENGFLAGEDADDVEREEESESDEVDEDPEDDDLVNPSIANQNSEQYDDTNICSSNGKEILGRNVDLIQNDFDTNLPCFPKNGSTDADCPSSVSRQPAPCKDLNAGNLDQDNMEIDESKSGESWILGLAEGEFSDLSIEERLNALVALVGVANEGNSIRVVLEDRLESANALKKQMWAEAQIDKVRLKDDNISKSDFPSLTGHKVETQYTYPAVEGNQSPMLDININNINNEASPSTAENQKGAPVAQSMLMEKSSSIQDFGTGTGADIPQTQVPVQYSKRSRSQLKSYIAHIAEEMYVYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVEYHDGKWRLIDSEEAFDALLTSLDSRGIRESHLRLMLQKTENSFKENVRKKNTQCAKNGSRGKVSIKIEADEPYCIPDHNAGSDSPSSTLHDLNPDTSENSSSFKIELGKTESEKKAALRRYQDFQKWLWKECYNSSVLCAMKYGIKRCKPQMDICDICFNLYFVEDSHCNSCHRTFPSNNGFNFSKHAFQCQDKLSKDNCVLEYSLPLRTRLLKVLLACMEVSVLSEAFGASWTDDIRKHWGVKLSKSSSVEELLQILTLFERALRRDFLSSNFSTTDELLGSSSMSESSVQASTDPESVAVLPWVPLTTAALSLRLFEIDSSVSYVKLEKLEPCEEKEAREYIKLPSRYTHTKSNREVEPAEFDHDEFTKDKSVPKKIVRSGNKRRRGTNEQGRGKKLAKRVYNSKRDGGRRNAKVTDNLSHKLKHQGRGTQGQGAGRGRRTVRKRRVGKRAVEDLLLGHTTASHSSKIDSEPLRNLDEEWDGEKASPMTPVHVGVAEHSNSAEEVESDDDNAQAVEYDQGNWEVGFNGVPPNGWSRDLVGMSDEDVDAFEDDNDNDNDIEENEEEDSEADVMSEGSDGMTNRVVNVGGSDSASSEDSSD 1277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0475 1277 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 1277 IPR044977 GO:0006357
Ssu1g0475 1277 MobiDBLite consensus disorder prediction 1056 1123 - -
Ssu1g0475 1277 MobiDBLite consensus disorder prediction 1222 1250 - -
Ssu1g0475 1277 MobiDBLite consensus disorder prediction 378 394 - -
Ssu1g0475 1277 MobiDBLite consensus disorder prediction 754 781 - -
Ssu1g0475 1277 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 643 715 IPR028941 -
Ssu1g0475 1277 ProSiteProfiles DDT domain profile. 70 129 IPR018501 -
Ssu1g0475 1277 MobiDBLite consensus disorder prediction 1200 1277 - -
Ssu1g0475 1277 MobiDBLite consensus disorder prediction 353 376 - -
Ssu1g0475 1277 MobiDBLite consensus disorder prediction 1056 1102 - -
Ssu1g0475 1277 Pfam HB1, ASXL, restriction endonuclease HTH domain 252 320 IPR007759 GO:0006355
Ssu1g0475 1277 MobiDBLite consensus disorder prediction 1256 1277 - -
Ssu1g0475 1277 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 462 505 IPR028942 -
Ssu1g0475 1277 Pfam DDT domain 72 126 IPR018501 -
Ssu1g0475 1277 PANTHER HOMEOBOX DOMAIN PROTEIN 1 1277 - -
Ssu1g0475 1277 MobiDBLite consensus disorder prediction 350 394 - -
Ssu1g0475 1277 SMART testlast3 70 129 IPR018501 -
Ssu1g0475 1277 MobiDBLite consensus disorder prediction 756 781 - -
Ssu1g0475 1277 ProSiteProfiles HARE-type HTH domain profile. 252 321 IPR007759 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0475 Ssu-Chr1 10778489 10784284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0475 1 1205 Homeobox Transcription Factor Family AT1G28420 48.475 0.0 1036
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Ssu1g0475 WSD 3.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0475 - - ccaj:109811517 2221.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0475 1 10778489 10784284 Ssu1g0475 1 10778489 10784284 ECH