Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0470 ATGGGTGTGGACTACTATAAGATTTTGCAGGTTGACAAGAATGCCACGGATGAAGAGTTGAAGAAAGCTTACAGAAAGCTTGCCATGAAATGGCACCCCGACAAGAATCCAAACAATAAGAAAGAGGCTGAGACTAAGTTCAAACAGATATCTGAAGCCTATGAGGTTCTAAGTGATCCCCAGAAGAAAGCAATTTATGATCAATACGGAGAAGAAGGGCTTAAAGGGCAGGTGCCACCTCCAGATGCTGGTGGGCCTACATTCTTCCAAACTGGGGATGGCCCAACAACGTTCAGGTTCAATCCAAGGAATGCAGACGACATTTTTGCGGAGTTTTTCGGGTTTTCAAGCCCATTTGGAGGTGGTGGCAGCGGCATGAGGGGTGGTTCCTTCGGTGGAATTTTTGGCGATGATATATTTAGTTCATTTGGAGAAGGAAGGCCCATGAGTCAGGGTCCACGCAAGGCACCTCCCATTGAAAAGACATTGCCTTGCACCCTTGAGGAGCTCTATAAGGGCACTACCAAAAAGATGAAGATCTCAAGGGAAATTGCTGATGCAAGCGGGAGAACTTTGCCGGTGGAAGAAATCTTGACCATTGAAATTAAACCTGGGTGGAAAAAGGGGACAAAGATCACATTCCCAGAGAAAGGAAATGAGCAGCCAAATGTTATTGCTGCGGATCTTGTGTTTGTTATTGATGAGAAACCCCACCCCATGTTTACTAGAGATGGTAATGATTTGGTTGTGACACAAAAGGTGTCACTTGCGGAAGCTCTAACAGGCTACACTGTCCATCTTACAACACTTGATGGCAGGGTTCTCAACATTCCCGTAAACAATGTGATTCATCCAAACTATGAAGAGGTGGCCCCAGGGAAGGGATGCCAATTCCAAAAGATCCTTCAAAGAGGGGTAATCTTAGGATCAAATTCAACATCAAATTCCCAGCAAGGTTGA 960 0.4531 MGVDYYKILQVDKNATDEELKKAYRKLAMKWHPDKNPNNKKEAETKFKQISEAYEVLSDPQKKAIYDQYGEEGLKGQVPPPDAGGPTFFQTGDGPTTFRFNPRNADDIFAEFFGFSSPFGGGGSGMRGGSFGGIFGDDIFSSFGEGRPMSQGPRKAPPIEKTLPCTLEELYKGTTKKMKISREIADASGRTLPVEEILTIEIKPGWKKGTKITFPEKGNEQPNVIAADLVFVIDEKPHPMFTRDGNDLVVTQKVSLAEALTGYTVHLTTLDGRVLNIPVNNVIHPNYEEVAPGKGCQFQKILQRGVILGSNSTSNSQQG 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0470 319 Gene3D - 238 308 - -
Ssu1g0470 319 CDD DnaJ_C 157 295 - -
Ssu1g0470 319 PRINTS DnaJ domain signature 62 81 IPR001623 -
Ssu1g0470 319 PRINTS DnaJ domain signature 6 24 IPR001623 -
Ssu1g0470 319 PRINTS DnaJ domain signature 42 62 IPR001623 -
Ssu1g0470 319 PRINTS DnaJ domain signature 24 39 IPR001623 -
Ssu1g0470 319 CDD DnaJ 4 59 IPR001623 -
Ssu1g0470 319 SMART dnaj_3 3 62 IPR001623 -
Ssu1g0470 319 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Ssu1g0470 319 Pfam DnaJ domain 4 67 IPR001623 -
Ssu1g0470 319 Gene3D - 158 236 - -
Ssu1g0470 319 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Ssu1g0470 319 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE 1 300 - -
Ssu1g0470 319 SUPERFAMILY HSP40/DnaJ peptide-binding domain 241 305 IPR008971 GO:0006457|GO:0051082
Ssu1g0470 319 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 300 - -
Ssu1g0470 319 SUPERFAMILY HSP40/DnaJ peptide-binding domain 153 248 IPR008971 GO:0006457|GO:0051082
Ssu1g0470 319 Pfam DnaJ C terminal domain 159 304 IPR002939 -
Ssu1g0470 319 SUPERFAMILY Chaperone J-domain 3 127 IPR036869 -
Ssu1g0470 319 Gene3D DnaJ domain 3 146 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0470 Ssu-Chr1 10748390 10749847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0470 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 1.35e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0470 K09510 - gmx:100775897 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0470 1 10748390 10749847 Ssu1g0470 1 10748390 10749847 ECH