Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0467 ATGGACACTCTCCCTCGATTCCATGGTGCACATCGCAGTGTCACTGTTCACGCCACTGTGCGGCGCTTCCAAAACGTCGTCGTCGCTTCGTTCTCAAATTCCTCGCGATGTCGTCGAACTGGGACTCCGAGGTATTCAGTTGGCACTACGACCTGGAGCTCGACCATCAAACCCGCAAAATTCTCGGCCACAAGCTCTTATTCATTATCGTCCTCTTCTCCATCATCTTCCTCTTCGCCGCGCTCTTCGTCTACGCGCCCGATCTGCCGCCTCCTCCCCGTCGTCCGACTGCGCCTCGACGCCGACGCGATCAACCAGGCGCCGCCGAGGCCGAACCGCGCGGCGGAGGGGACCGAGTGCTGCATCTGCCTTGGCGCGTTCGTCGACGGCCAGAAGCTGAAGGTTTTGCCGGGGTGCGACCATAGCTTCCATCGCGAGTGCATTAATAAGTGGCTCGCGAATCACTTTAATTGCCCTCTGTGTAGAGCTTCTCTTAAGCTCGATTCTTCGTTCCCCGGGATTTTGATCCAAGAGCCACCCGTTAGAACTAGTCTTCCGGTCTGa 564 0.5762 MDTLPRFHGAHRSVTVHATVRRFQNVVVASFSNSSRCRRTGTPRYSVGTTTWSSTIKPAKFSATSSYSLSSSSPSSSSSPRSSSTRPICRLLPVVRLRLDADAINQAPPRPNRAAEGTECCICLGAFVDGQKLKVLPGCDHSFHRECINKWLANHFNCPLCRASLKLDSSFPGILIQEPPVRTSLPV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0467 187 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Ssu1g0467 187 MobiDBLite consensus disorder prediction 65 85 - -
Ssu1g0467 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 170 IPR013083 -
Ssu1g0467 187 SMART ring_2 120 161 IPR001841 -
Ssu1g0467 187 Pfam Ring finger domain 119 162 IPR001841 -
Ssu1g0467 187 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 88 176 IPR044675 -
Ssu1g0467 187 PANTHER RING-H2 FINGER PROTEIN ATL66 88 176 - -
Ssu1g0467 187 SUPERFAMILY RING/U-box 110 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0467 Ssu-Chr1 10705480 10706305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0467 116 180 C3H Transcription Factor Family AT5G10380 49.231 7.57e-17 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0467 - - gmx:100794554 146.747