Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0459 ATGGCGCCGAGGGACAAGACCGGTGGCGTTAAGGGTAACGGTAACGGTAACGGCGGGGTGAAGGAGGTGCATTTTCGGGGAGTGAGGAAGAGGCCGTGGGGGAGATACGCGGCGGAGATCAGAGATCCCGGCAAGAAGAGCCGCGTTTGGCTCGGCACCTTCGACACGGCGGAGGAGGCGGCGCGTGCCTACGACGCCGCCGCACGCGACTTTCGCGGACCCAAGGCGAAGACCAACTTCCCCCTCCCTTCCGACAATGTCAAGAACCCGAGCCCCAGCCAGAGCAGCACCGTCGAGTCCTCCAGCCGCGACCGCGACGTCGCCGCCGATTCCTCGCCGCTCGACCTCAACCTCGCCCCCGCCGCCGCCGCCAGATTCCCCTTCCAGCACCAGTTCGCGCCGATCGGCGCGGTTTTTCCCGGCGCGGTGCCGGCGGCCAACCAGGTTTTCTTCTTCGACGCTGTCCTACGCGCCGGCATGGCCGGTCCGCGTGGCTTTGGGTTTGGTTACGGTCATCCCGTTGCGGCGAGTGAGCTTCACGCGACGGCGAGCGACTCGGACTCGTCCTCCGTCATCGATCTGAACCACAACGAAGGAGACCTTAAGGGCGCCGGTTCTAGAATCTTCGATCTCGACCTTAACCACCCTCCTCCGCCAGAGATCGCTTGA 669 0.6517 MAPRDKTGGVKGNGNGNGGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARDFRGPKAKTNFPLPSDNVKNPSPSQSSTVESSSRDRDVAADSSPLDLNLAPAAAARFPFQHQFAPIGAVFPGAVPAANQVFFFDAVLRAGMAGPRGFGFGYGHPVAASELHATASDSDSSSVIDLNHNEGDLKGAGSRIFDLDLNHPPPPEIA 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0459 222 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 1 87 - -
Ssu1g0459 222 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 86 200 - -
Ssu1g0459 222 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Ssu1g0459 222 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Ssu1g0459 222 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Ssu1g0459 222 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Ssu1g0459 222 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Ssu1g0459 222 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 87 - -
Ssu1g0459 222 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 86 200 - -
Ssu1g0459 222 MobiDBLite consensus disorder prediction 82 102 - -
Ssu1g0459 222 MobiDBLite consensus disorder prediction 1 28 - -
Ssu1g0459 222 MobiDBLite consensus disorder prediction 73 111 - -
Ssu1g0459 222 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Ssu1g0459 222 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Ssu1g0459 222 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0459 Ssu-Chr1 10606951 10607619 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0459 1 87 AP2-EREBP Transcription Factor Family AT5G44210 70.526 2.03e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu1g0459 AP2 4.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0459 K09286 - gmx:100170742 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0459 1 10606951 10607619 Ssu1g0459 1 10606951 10607619 ECH
Ssu3g1754 3 53629995 53630552 Ssu1g0459 1 10606951 10607619 ECH
Ssu3g2106 3 69265225 69265902 Ssu1g0459 1 10606951 10607619 ECH