Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0458 ATGATGGCGTCTTCTTCCTCGGCCTCTCGCGAGGGACACTACAGGGGGGTCAGGAAGCGACCCTGGGGACGCTACGCCGCTGAAATACGCGACCCCTGGAAGAAGACACGTGTCTGGTTGGGCACATTCGATACTCCCGAGGAGGCCGCGCTCGCCTACGACGGCGCCGCCCGCTCCCTCCGCGGCGCCAAGGCCAAGACCAACTTCCCTCCGGCGCCGCCGCTCTGCCTCGACCTCAACGTCCCTTCCTCCGATCACCGCTGGCCGAACGTCCCCTCGCGCAGCCTCGTCCTCACCGAGTTTCTCCACACCGGCGTCCTCAAGGACATCGAACCGCCGCAGCCGCCCCCCGCAGCCGCCGTTGGTCTCAGACGCGGCGACGGCGCTGTCGCCGCTGGCGGCGCAGCTCAAATCGTGGAGAGCTCTCAGACGGCGTCGTTTCTGGGACTCGTTCGGCGTGGGATCCCCATCGACTTGAACGAGCCTCCACCGTTGTGGCTATGA 504 0.6706 MMASSSSASREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPAPPLCLDLNVPSSDHRWPNVPSRSLVLTEFLHTGVLKDIEPPQPPPAAAVGLRRGDGAVAAGGAAQIVESSQTASFLGLVRRGIPIDLNEPPPLWL 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0458 167 CDD AP2 13 72 IPR001471 GO:0003700|GO:0006355
Ssu1g0458 167 ProSiteProfiles AP2/ERF domain profile. 13 70 IPR001471 GO:0003700|GO:0006355
Ssu1g0458 167 Gene3D AP2/ERF domain 13 71 IPR036955 GO:0003700|GO:0006355
Ssu1g0458 167 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Ssu1g0458 167 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Ssu1g0458 167 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 157 - -
Ssu1g0458 167 SMART rav1_2 13 76 IPR001471 GO:0003700|GO:0006355
Ssu1g0458 167 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE 8 157 - -
Ssu1g0458 167 SUPERFAMILY DNA-binding domain 13 70 IPR016177 GO:0003677
Ssu1g0458 167 Pfam AP2 domain 13 62 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0458 Ssu-Chr1 10555710 10556213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0458 4 167 AP2-EREBP Transcription Factor Family AT1G28360 48.731 3.94e-47 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu1g0458 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0458 - - gmx:100798369 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0458 1 10555710 10556213 Ssu1g0458 1 10555710 10556213 ECH