Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0456 ATGTCTGTCCCCGATTCTCCCGTCGCCGCCGATGTCGACACCGATCCATCGCTCGAAGAAGAGGTCGAAGAAGAAATAGAGGAGGAGGTCGAGGAAGAAGTCGAGGAAGAAGTCGAGGAAGAAGTGGAAGAGGAAGAAGTTGAGGAAGAAGTGGAAGAGGAAGAAGTTGAGGAAGAAGTGGAAGAGGAAGAGGTTGAGGAGGAAGTCGAAGAGGAAGAGGtcgaggaagaagaagaggaagaggaagaggtagaggtagaggaagaagaagagggagaACAAGGAGAAGAACAACAAGTTGAAGAagtggaggaagaagaagaagaagaagaagaagaagaagaagtcgaagaggaggaggaggaggaggaagaacaaaaagaagaagaagcagcaGTGGAGAaggaagaacaacaacaacaacaagtggtggaggagaaggaagaagaagaagaacaacaacaagaagaagcaGTGGAGGAGAAGgaggaacaacaacaacaacaacaagtagCAGTGGAGGAGGACAAAACGGCGGTGCCAGGTTCTCCACCGGATGCTGATAAACAACGCAAAGATTCAAGCCAACATATGGAGTCTGAGGGGCAAGAGAAAAACTTGCAGCCAGTTTCTGAAAACCCTGAAGTAATGCCACCATCTAGCATGCATTGCATGGAAGAGAATGATACCATGCTCAAAACATCTGTTCCTTCATGTGAGACACTAACATTGAAAAAGGAAGAGCTTCACCTGAAATATGAAATTTCAAGTCATccaaaatcaagagaaaatcAGACTTCTGCTGAAGATAGCAAAAGTGAAGGATTAGATGTTGACGTTGAAAATGCTGAACCCCTTCTACAGAAGGAAACCCTTGGAGGATACAGTGAGCCAGGTTGCAATAACAAAGCTAATTTATGTGGTGATAATGATATTGATTCTAGGGCCAGGGCCACCAAGTCATCTAGTGATACTGGACAAGATATGGTTATTGGCCTCCTACCAAGAGATTGCCTTGGTGAGGATGCTAATGGTGGTCAAAATTCTAGGAACAAAATCATGCAGTCGGAGATAGAGTCAAGGGATGATGTGAAACAAATGACATTAAGCAGGACTAGAAGTCTGTCTCCCAGTGCTGAGATTAAAGAAGGAAACAAACGCCCCAGAATTGTATGTGATTTTTTTGCTAAAGGATGGTGCATCAGAGGTAGTTCTTGTAGTTTTCTTCATATAAAAGATACTGTGGACAATACTGACCAGGAGGCTGAAGCAGACTTAGTGACTGCACATCAGAAGAGAGAATTGAAAGTGGAAGAAGGTGTTAGGGAAAATGTTGAGAGATCAAGGATGAATGAGCAAGAAACAAGCCCTAGTTGGCATCCATCTCAAGAAAAACAGAAGTTTCCACTGAGGGACAGCTTGTTTCCAGATAATAGATTTGCATTTAGTGCATCAAATGATTATTTCAGCCCAAATCTTTCTTTGAATTCAACCCGTGCAGATGGAATGGCTACTCGTTGGAACCAACATATGTACAAAGGATATACTTGCGCAATTTTGAGCCATTCACCAAATTCAAGCCTGGTTACTCAATTTCCAGCTACGAGCATGTCGCTCTCCCACCGGATTCCAGCCCAATCAGGACATTCATTGCCTTTTAGTTCATCTTTGGGGGCAAGTAATGTGGATTCTCAAAAGCTTTTGAACACTGACAAAGAATATCTCACCTCTAAGTCCGCTTTCTCTGGTTCAGGGCGGGAAGATTTGCCTCTAGTTAGTTCATCTAGGGTTCCATCATATCCTACTGGATATAAATCAAAAATCTGTTCTTATGATTGGGAACCTTCTGTGCCCTTTCGACCATCCTTTTTTATTACTTCTATGAATGTATCATCTCCTGGAGATCTTTATGATCCTCTTCGTGATAGCATTGAGATACCTAATATAGGAGATGGGTCTTTGAAGGCTTCCCTTTTAATTCATGGATCAAATGTACAGGCTTCATCACAGGTTCGGACATATGGTGATTCTGCTGTAGTGGGGAAACACATGTCCAATCTTAATGATGACAAAAGTTCTGTATCTtctcataataaattttgtgaaaatgagtCAAACAAAGATTGTGTTCCTCATGAAAAAGATTGCCTTGCACCTGAAACAGAGATAACATCAGGAACTTATGAAAACTATCAAAATGGTAAAATGGGCATGGGACAACATACCTTTGGTGTTGCAGATaggacaaaaaaagagagagattcgACTGAGCGTGATGCTAGACATCATGGTGAAGGATCGGGGCGCAAAAAGAAGAGAGTAGATAGGGATAAGAAAAATCATGAAATGGATGTTGACTTTCAGATGGATGGCAGCATGCAGAAGGAATCAAAGGCACTAAAAATTCTTCGCACAGCTCTTATTGATCTTGTAAAAGAGTTGTTAAAACCAGCTTGGCATGAGGGTCGTCTCAGCAAGGATGCGCATATTATGATAGTCAAAAAAGCAATTGACAAGGTTGTTAGCACCTTGGAGCCCCATCAGATTCCGACCATAGATACTGCTAAGCAATATGTTTCTTCAAGTCGGGTGAAAATTGCAAAGATGGTCAATGGATATGTCAATAAATATGGCAAATCTTGA 2643 0.3712 MSVPDSPVAADVDTDPSLEEEVEEEIEEEVEEEVEEEVEEEVEEEEVEEEVEEEEVEEEVEEEEVEEEVEEEEVEEEEEEEEEVEVEEEEEGEQGEEQQVEEVEEEEEEEEEEEEVEEEEEEEEEQKEEEAAVEKEEQQQQQVVEEKEEEEEQQQEEAVEEKEEQQQQQQVAVEEDKTAVPGSPPDADKQRKDSSQHMESEGQEKNLQPVSENPEVMPPSSMHCMEENDTMLKTSVPSCETLTLKKEELHLKYEISSHPKSRENQTSAEDSKSEGLDVDVENAEPLLQKETLGGYSEPGCNNKANLCGDNDIDSRARATKSSSDTGQDMVIGLLPRDCLGEDANGGQNSRNKIMQSEIESRDDVKQMTLSRTRSLSPSAEIKEGNKRPRIVCDFFAKGWCIRGSSCSFLHIKDTVDNTDQEAEADLVTAHQKRELKVEEGVRENVERSRMNEQETSPSWHPSQEKQKFPLRDSLFPDNRFAFSASNDYFSPNLSLNSTRADGMATRWNQHMYKGYTCAILSHSPNSSLVTQFPATSMSLSHRIPAQSGHSLPFSSSLGASNVDSQKLLNTDKEYLTSKSAFSGSGREDLPLVSSSRVPSYPTGYKSKICSYDWEPSVPFRPSFFITSMNVSSPGDLYDPLRDSIEIPNIGDGSLKASLLIHGSNVQASSQVRTYGDSAVVGKHMSNLNDDKSSVSSHNKFCENESNKDCVPHEKDCLAPETEITSGTYENYQNGKMGMGQHTFGVADRTKKERDSTERDARHHGEGSGRKKKRVDRDKKNHEMDVDFQMDGSMQKESKALKILRTALIDLVKELLKPAWHEGRLSKDAHIMIVKKAIDKVVSTLEPHQIPTIDTAKQYVSSSRVKIAKMVNGYVNKYGKS 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0456 880 MobiDBLite consensus disorder prediction 745 764 - -
Ssu1g0456 880 SUPERFAMILY CCCH zinc finger 386 410 IPR036855 GO:0046872
Ssu1g0456 880 MobiDBLite consensus disorder prediction 186 200 - -
Ssu1g0456 880 MobiDBLite consensus disorder prediction 441 466 - -
Ssu1g0456 880 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 156 880 - -
Ssu1g0456 880 MobiDBLite consensus disorder prediction 730 784 - -
Ssu1g0456 880 MobiDBLite consensus disorder prediction 143 159 - -
Ssu1g0456 880 MobiDBLite consensus disorder prediction 14 131 - -
Ssu1g0456 880 MobiDBLite consensus disorder prediction 686 705 - -
Ssu1g0456 880 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 156 880 - -
Ssu1g0456 880 SMART c3hfinal6 387 412 IPR000571 GO:0046872
Ssu1g0456 880 ProSiteProfiles Zinc finger C3H1-type profile. 386 413 IPR000571 GO:0046872
Ssu1g0456 880 Coils Coil 19 175 - -
Ssu1g0456 880 MobiDBLite consensus disorder prediction 201 215 - -
Ssu1g0456 880 MobiDBLite consensus disorder prediction 254 276 - -
Ssu1g0456 880 MobiDBLite consensus disorder prediction 1 226 - -
Ssu1g0456 880 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 391 410 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0456 Ssu-Chr1 10509843 10516233 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu1g0456 zf-CCCH 7.6e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0456 - - gmx:100819734 1168.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0456 1 10509843 10516233 Ssu1g0456 1 10509843 10516233 ECH