Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0452 ATGAACGAAAGTTGGAGTGAGGGAAAAAGGAGCATGAATTACAAGGAGGAGGATGAGTacgaagaagaggaagaggaagaggtgaGTGAGATGGGTTATGGAGAGGATGGTAGGAAGAAGAGGGTGGTGACTAGTAAGAGTGGGTTCAAAGCTGGAGGCTCAGCGCCACCTTCTTGTCAAGTGGATGGTTGTAATGCTGATCTAAGTGATGCTAAGCCCTACCACAGGCGTCACAAGGTTTGTGAGTTCCATGCCAAGGCTCCTGCCGTACTCATGGCAGAGCAGCACCAACGGTTTTGCCAACAATGTAGTAGGTTTCACGAGCTATCAGAATTTGATGACTCAAAAAGGAGTTGTAGAAGACGTTTGGCTGGACACAATGAGAGGCGTCGCAAAAATGCATCTGAATATCAGGGGCTTTGA 423 0.4468 MNESWSEGKRSMNYKEEDEYEEEEEEEVSEMGYGEDGRKKRVVTSKSGFKAGGSAPPSCQVDGCNADLSDAKPYHRRHKVCEFHAKAPAVLMAEQHQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKNASEYQGL 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0452 140 PIRSF SBP 6 139 IPR017238 GO:0003677|GO:0003700|GO:0009908
Ssu1g0452 140 Pfam SBP domain 59 132 IPR004333 GO:0003677
Ssu1g0452 140 MobiDBLite consensus disorder prediction 1 36 - -
Ssu1g0452 140 ProSiteProfiles Zinc finger SBP-type profile. 56 133 IPR004333 GO:0003677
Ssu1g0452 140 MobiDBLite consensus disorder prediction 17 31 - -
Ssu1g0452 140 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 14 134 - -
Ssu1g0452 140 SUPERFAMILY SBT domain 57 136 IPR036893 GO:0003677|GO:0005634
Ssu1g0452 140 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 14 134 IPR044817 GO:0003677
Ssu1g0452 140 Gene3D - 50 120 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0452 Ssu-Chr1 10450452 10452262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0452 52 136 SBP-box Gene Family AT2G33810 68.235 3.03e-40 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ssu1g0452 SBP 1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0452 - - gmx:100782285 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0452 1 10450452 10452262 Ssu1g0452 1 10450452 10452262 ECH
Ssu8g1165 8 20820368 20821330 Ssu1g0452 1 10450452 10452262 ECH
Ssu5g1672 5 51050787 51051218 Ssu1g0452 1 10450452 10452262 PCT