Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0450 ATGGAAGACGGCAGGCCCACCATCATCACCAACACCGAGGGCCAGAGAACCACGCCCTCCGTCGTTGCCTACATCAAGAACGGCGACAAGCTCGTAGACCAAATTGCCAAGCGTCAGTGCGTCGTCAACCTCGAAAACACTTTCTTCTCTAACAAAAGGTTCATTAGGAGGAAAATGTCTAAGGTCAACAAAAATTCGAAGCATGTCTCCTACAAAGTCATCAGAGATGACAACGACAACGTCAAACTAGACTGCCCCCTAATTCGGAAGCAGTTTGCTGTTGAAGAAATTTATGCACAAGTGTTGAGGAAGCTTGTGGATGGTGCTTCTAAGTTTTTGAACTATAAAGTGACTAAGGTTGTTGTTATTGTGCCTGCTTACTTCAATGACTCGCAAAGGATTGCGATCAAGGATGCTAGTTGA 423 0.4539 MEDGRPTIITNTEGQRTTPSVVAYIKNGDKLVDQIAKRQCVVNLENTFFSNKRFIRRKMSKVNKNSKHVSYKVIRDDNDNVKLDCPLIRKQFAVEEIYAQVLRKLVDGASKFLNYKVTKVVVIVPAYFNDSQRIAIKDAS 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0450 140 PANTHER STROMAL 70 KDA HEAT SHOCK-RELATED PROTEIN, CHLOROPLASTIC-LIKE 1 139 - -
Ssu1g0450 140 PRINTS 70kDa heat shock protein signature 13 25 - -
Ssu1g0450 140 PRINTS 70kDa heat shock protein signature 36 44 - -
Ssu1g0450 140 PRINTS 70kDa heat shock protein signature 120 140 - -
Ssu1g0450 140 Pfam Hsp70 protein 1 139 IPR013126 GO:0005524|GO:0140662
Ssu1g0450 140 PANTHER HEAT SHOCK PROTEIN 70KDA 1 139 IPR013126 GO:0005524|GO:0140662
Ssu1g0450 140 Gene3D - 1 140 - -
Ssu1g0450 140 SUPERFAMILY Actin-like ATPase domain 2 139 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0450 Ssu-Chr1 10387376 10387914 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0450 5 140 Calmodulin-binding Proteins AT3G12580 41.379 4.54e-24 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0450 K03283 - gmx:100807713 214.542