Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0447 ATGAAGTTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCTACGAGCATTTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTTTGGGTGAGGAATTCAAAGGCTATGTCTTCAAAATCACTGGAGGTTGTGACAAACAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGTTGCACAGAGGAACTCCCTGTTTCCGTGGATATGGAAGGCGCAATGGGGAGCGTAGGAGGAAGTCTGTTCGCGGGTGCATTGTCAGCCCAGACCTCTCTGTTCTGAACCTGGTAATTGTAAAGAAGGGTGAAAATGATTTACCAGGCTTGACAGATGTTGAAAAGCCAAGGATGAGGGGTCCAAAGAGAGCATCCAAAATTCGCAAGCTGTTCAACCTTTCTAAGGAGGATGATGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATGGGAAAAAGGTGAGCAAAGCTCCAAAGATACAACGACTGGTCACTCCCCTGACCCTCCAAAGAAAGAGGGCAAGGATTGCAGATAAGAAGAAGAGAATTGCCAAAGCAAAATCTGAGGCAGCAGAGTACCAGAGACTTCTTGCCTCTAGATTGAAGGAGCAGAGGGAACGCCGGAGCGAGAGCTTGGCTAAGAGAAGATCAAAGCTTTCTAGTGCTACTAAACAAGCCGCCACGGCATAA 750 0.4707 MKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVVGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQRLLASRLKEQRERRSESLAKRRSKLSSATKQAATA 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0447 249 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Ssu1g0447 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 248 - -
Ssu1g0447 249 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Ssu1g0447 249 Gene3D - 133 234 - -
Ssu1g0447 249 MobiDBLite consensus disorder prediction 218 237 - -
Ssu1g0447 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 248 IPR001377 GO:0003735|GO:0005840|GO:0006412
Ssu1g0447 249 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Ssu1g0447 249 MobiDBLite consensus disorder prediction 218 249 - -
Ssu1g0447 249 Coils Coil 189 223 - -
Ssu1g0447 249 PIRSF RPS6e 1 249 IPR014401 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0447 Ssu-Chr1 10297688 10299812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0447 1 249 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 71.084 1.59e-119 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0447 K02991 - gmx:100801194 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1677 5 51120646 51122929 Ssu1g0447 1 10297688 10299812 PCT