Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0439 ATGCCAGAGAGCTCCATGCCAAAGGAGGCAGTATACCAGAACATACACGACGAGCTGCTTCTAGATGGAAATCCAAAGCTGAACATGGCTTCCTTTGTCACCACAGCCATGGAGGAAGAGTGCAACAAACTCATTATGGAATCTATCAATAAGAACGCCATCAATATGGATGAGTATCCTGTTACAAATGAGTTCCACAACCGGTGCGTGAGCATGGTAGCGCGTCTATTCAATGCTCCAATCGGAGAAACTGAAAATGCAGCTGGAGCGGGAACTATTGGGTCATCGGAGGCCATAATGCTAGCAGGGCTTGCATTCAAGAACAAGTGGCAGAACAAACGCAAGGCTGAGGGCACACCCTATGACAAGCCCAATATCGTCACCGGCTCTAACTTGCACGTATGTTGGGAGAAATTTGCAAGGTATTTTGAGGTGGAGTTGAAGGAGGTGAAGGTAAAGGAAGGCTACTATGTGATGGACCCTGCCAAAGCTGTTGAGTTGGTGAACGAGAACACTATTTGTGTGGTCGCAATATTAGGTTCCACTTATAATGGAGAGTTCGAAGATGTCAAGCTCTTAAACGACCTTCTACtagaaaaaaacaagaaaactgGATGGGATACACATATTCATGTTGATGCTGCAAGTGGTGGCTTTATCGCTCCTTTCATTTACCCGGAGCTTGAATGGGATTTTAGACTCCCACTAGTTCAGAGCATCAATGTTAGTGGCCACAAGTATGGCCTAGTCTATGCTGGAATTGGTTGGGTTATTTGGAGGAGCAAGGATGATTTGCCAGAAAACCTTATCttccatattaattatcttgGAGCTGACCAGCCCACGTTCACCCTCAATTTCTCCAAAGGTTCTAGTCAGATTATTGCTCAATATTATCAGCTAATTCGCCTCGGCCATGAGGGGTATCGAAGTGTGATGCAAAATTGCAGAGAAAATGCCATTTTGGTAAAGGAAGGATTAGAGAAGACTGGATGCTTTAACATACTATCAAAGGACAATGGAGTTCCTGTAGTGGCATTTTCTCTTAAGGATAGAAACCTGCACGATGAATTTGAGATATCAAAGATGTTGCGTCGCCACGGTTGGAGTGTGCCGGCTTATCCAATGCCACCCGGTGCTGAGCACATCAATGTCCTCCGTGTTGTGATCAGAGCTGAGTTTTCTCGCACACTTGCTGAACACCTTCTGCTTGACATCACAAATGTGCTACATGAGCTTCACAAACTTACCCCAAAGTTCAATGTCCAAATGAACAACATGCATGAAGAGAATGTAGGTTACAATGGCGTGTAG 1314 0.4399 MPESSMPKEAVYQNIHDELLLDGNPKLNMASFVTTAMEEECNKLIMESINKNAINMDEYPVTNEFHNRCVSMVARLFNAPIGETENAAGAGTIGSSEAIMLAGLAFKNKWQNKRKAEGTPYDKPNIVTGSNLHVCWEKFARYFEVELKEVKVKEGYYVMDPAKAVELVNENTICVVAILGSTYNGEFEDVKLLNDLLLEKNKKTGWDTHIHVDAASGGFIAPFIYPELEWDFRLPLVQSINVSGHKYGLVYAGIGWVIWRSKDDLPENLIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGHEGYRSVMQNCRENAILVKEGLEKTGCFNILSKDNGVPVVAFSLKDRNLHDEFEISKMLRRHGWSVPAYPMPPGAEHINVLRVVIRAEFSRTLAEHLLLDITNVLHELHKLTPKFNVQMNNMHEENVGYNGV 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0439 437 PANTHER GLUTAMATE DECARBOXYLASE 1 428 IPR010107 GO:0004351|GO:0006536|GO:0030170
Ssu1g0439 437 PANTHER GLUTAMATE DECARBOXYLASE 1 428 - -
Ssu1g0439 437 Pfam Pyridoxal-dependent decarboxylase conserved domain 2 350 IPR002129 GO:0016830|GO:0019752|GO:0030170
Ssu1g0439 437 Gene3D - 35 329 IPR015421 GO:0003824
Ssu1g0439 437 SUPERFAMILY PLP-dependent transferases 1 414 IPR015424 -
Ssu1g0439 437 Gene3D - 1 34 - -
Ssu1g0439 437 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 1 413 IPR010107 GO:0004351|GO:0006536|GO:0030170
Ssu1g0439 437 Gene3D - 330 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0439 Ssu-Chr1 10111471 10115769 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0439 1 419 Calmodulin-binding Proteins AT5G17330 78.998 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0439 K01580 - gmx:100782330 734.947