Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0438 ATGGGAGGAGCCTTCAACGTGGGAGCTGTTCCGTTCAACCCCGACGGATGGGGTCCGCCGGACTCCGCCACCGCCGGCAGCACCAACCACCTTCCCCTAAACGTCCCCTTCGCCCCCTTCTCCCGCTCCGACAAGCTGGGCCGCATCGCGGACTGGACCCGCAACTTCAACAACCCGGCCAGGCCCAAGAACCCCGCGGACTCCGTCTTCGACTTCACCAACGACGACTCCTTCCCCGCCTCCGCCGACGACGACGCGTCGTTCCGCCTCGTCGACGGCAAGCCCCCGCCGCGGCCCAAATTCGGCCCGAAGTGGCGCTTCCAACAGCAACGCCAGCTTCCTCAGCGCCGCGACGAGGAAGTGGAGGCGCGCAAGCGCGAAGCCGAGAAGGAGCGCGCGCGGCGCGACCGGCTCTACCACATGAACCGCTCGAACCCTAACGCGCCGCGCCGCGAGGCCGCGGTATTCAAGTCCTCGGTGGACATCCAACCCGAGTGGAACATGCACGACCAGATCCCGTTCTCGACCTTCTCGAAGCTCTCCTTCACCGTCCCTGAGCCCGAGGACCTTCTCCTCTGCGGCGCGCTCGAGTACTACGACCGCTCCTACGACCGCATCACCCCCAAAAACGAGCGCCGCCTCGAACGGTTCAAGAACCGAAACTTCTTCAAAGTCACCACCACCGACGACCCCGTCATCCGGAGGCTCGCGAACGAGGACAAGGCGACGGTGTTCGCCACCGACACTATTCTCTCCACTCTCATGTGCGCGCCCAGGTCTGTTTATTCCTGGGACATTGTCGTCCAGCGTGTCGGGAACAAGTTGTTCTTCGATAAGCGCGACGGGTCGCAGCTTGATTTGCTCTCTGTTCATGAGACCTCGCAGGAGCCCTTGCCTGAGGCCAAGGATGATATTAACTCCGCTCATTCGTTGAGCGTTGAGGCTGCTTATATCAACCAGAATTTCTCGCAGCAGGTGCTGATTAGGGATGGGAATAAGGTTACTTTTGATGAGGCTAACCCTTTTGCTAACGAGGGGGAAGAGGTTGCTTCTGTGGCTTACAGGTATCGGAGGTGGAAGCTTGATGATGATATGTATCTTGTTGCGAGGTGTGAGGTGCATAGTGTTGTGGATGTGAATAAGCAGAGGTCGTTCCTTACTTTGAATGCGTTGAACGAGTTTGATCCTAAGTATTCGGGGGTGGATTGGAGGCAGAAGTTGGAGACTCAGAGGGGTGCTGTGTTGGCCACTGAGCTTAAGAATAATGCGAATAAGTTGGCTAAGTGGACTGCTCAGGCTCTGTTGGCTAGTGCGGATATGATGAAGTTGGGGTATGTGTCGAGGATTCATCCCCGTGATCATTTTAATCATGTGATTTTGGCTGTCGTCGGGTACAAGCCCAGGGATTTTGCGGCGCAGATCAATTTGAACACGGCGAATATGTGGGGTATTGTGAAGTCTATTGTGGACTTGTGCATGAAATTGAATGAGGGGAAGTATGTGCTTGTGAAGGATCCGTCTAAGCCACAGGTTAGGATTTATGAGGTTCCGGCGGATGCGTTTGAAAATGACTATGTGGAGGAGCCACTTCCGGAGGAGGAACAAGCTCAACCGCCGGCTGAGGGTGCTGAGGGGGGAGAGGCAGCTGCTACCACTGATGATGTGGAAGATAAGCAGATAGATGTTCAAGCTTAA 1695 0.5652 MGGAFNVGAVPFNPDGWGPPDSATAGSTNHLPLNVPFAPFSRSDKLGRIADWTRNFNNPARPKNPADSVFDFTNDDSFPASADDDASFRLVDGKPPPRPKFGPKWRFQQQRQLPQRRDEEVEARKREAEKERARRDRLYHMNRSNPNAPRREAAVFKSSVDIQPEWNMHDQIPFSTFSKLSFTVPEPEDLLLCGALEYYDRSYDRITPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDTILSTLMCAPRSVYSWDIVVQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPEAKDDINSAHSLSVEAAYINQNFSQQVLIRDGNKVTFDEANPFANEGEEVASVAYRYRRWKLDDDMYLVARCEVHSVVDVNKQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLASADMMKLGYVSRIHPRDHFNHVILAVVGYKPRDFAAQINLNTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYVEEPLPEEEQAQPPAEGAEGGEAAATTDDVEDKQIDVQA 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0438 564 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 4 563 IPR007783 GO:0003743|GO:0005737|GO:0005852
Ssu1g0438 564 Hamap Eukaryotic translation initiation factor 3 subunit D [EIF3D]. 3 527 IPR007783 GO:0003743|GO:0005737|GO:0005852
Ssu1g0438 564 MobiDBLite consensus disorder prediction 1 30 - -
Ssu1g0438 564 PIRSF Transl_init_eIF3d 2 545 IPR007783 GO:0003743|GO:0005737|GO:0005852
Ssu1g0438 564 Pfam Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 7 515 IPR007783 GO:0003743|GO:0005737|GO:0005852
Ssu1g0438 564 Coils Coil 116 136 - -
Ssu1g0438 564 MobiDBLite consensus disorder prediction 525 564 - -
Ssu1g0438 564 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT D 4 563 - -
Ssu1g0438 564 Coils Coil 555 564 - -
Ssu1g0438 564 MobiDBLite consensus disorder prediction 111 132 - -
Ssu1g0438 564 MobiDBLite consensus disorder prediction 54 132 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0438 4 564 Eukaryotic Initiation Factors Gene Family AT4G20980 78.401 0.0 921
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0438 K03251 - gmx:100799613 1019.61