Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0437 ATGGGCTCCTTCGTTCTCTCCAGCGAGATCCCTACTTGTCATCTCCACAAACTTCTGCCGTCAATCGTTGACCGCCGCGCTCTCGCAAAGCCACTGACGCGCTGCAAGATCAGCTCTACAAACCACGTTAACCACCGCGCATTTGCTGTTGCGCAAAGACCTCATCGCCCTGCCACCGTCACCTTCGCGATACGCGAATCCAAACACCGTGACTCAGACTTGCTTGAGCAACAGCAATCTGCTGGCTGGAATATTGATATGGAGAACAACCCTAGTCCATCCAGAGTTGACAGAAAATTCATCGAGAGGAATAGAAGAAACCAAATGAAAGCTCTCTTCCGCAAACTCAACTCACTTGTGCCCCATCAGAGATCAAAGGAGTCCATTTCACTGCCGGATCAGCTAGAAGAAGCCACAAACTACATAAAGAAGTTACAGATTAATGTGGAGAAAATGAAGGACAAGAAGGACATGCTACTAGGAATTGAAAGGTCAAACGCAAGAATGAATGGAGGAAAGAATGGGTTAAAATCTCCCCGAATTGAGATCCAACAAATGGGTTCAGCCTTAGAGGTTATTCTAATAACTGGGTTGGATTCTCAGTTCATGTTCAGTGAAACCATTCGTGTTCTTCATGAAGAAGGAGTAGATGTTGTTAATGCCAGTTATAAAGTTATTGGAGATGCAGTTTTCCATTCCATACACTGTCAGGACGGGGAATCTGCCAATGGTGCTGCGAGGATATCTGAGAGACTAAAGAACTTTATCCATGATTCTAGCTACAGTGCCATTTAA 795 0.4528 MGSFVLSSEIPTCHLHKLLPSIVDRRALAKPLTRCKISSTNHVNHRAFAVAQRPHRPATVTFAIRESKHRDSDLLEQQQSAGWNIDMENNPSPSRVDRKFIERNRRNQMKALFRKLNSLVPHQRSKESISLPDQLEEATNYIKKLQINVEKMKDKKDMLLGIERSNARMNGGKNGLKSPRIEIQQMGSALEVILITGLDSQFMFSETIRVLHEEGVDVVNASYKVIGDAVFHSIHCQDGESANGAARISERLKNFIHDSSYSAI 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0437 264 SMART finulus 99 151 IPR011598 GO:0046983
Ssu1g0437 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 93 145 IPR011598 GO:0046983
Ssu1g0437 264 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 87 257 IPR015660 GO:0003700|GO:0006357
Ssu1g0437 264 Gene3D - 85 174 IPR036638 GO:0046983
Ssu1g0437 264 Pfam Helix-loop-helix DNA-binding domain 95 146 IPR011598 GO:0046983
Ssu1g0437 264 PANTHER TRANSCRIPTION FACTOR BHLH162 87 257 - -
Ssu1g0437 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 92 160 IPR036638 GO:0046983
Ssu1g0437 264 Coils Coil 135 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0437 Ssu-Chr1 10085652 10092041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0437 89 256 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 45.304 7.42e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu1g0437 HLH 1.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0437 - - gmx:100784418 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1688 5 51290519 51291223 Ssu1g0437 1 10085652 10092041 PCT