Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0422 ATGGCATTTCCGCACTACATTTCCCAGGATTTGAAAACCATCCCAGATGCTGTGACTGAGATAGAAAATTCCAATGGTTGTTTTGATTGCAACATCTGCTTAGACTATGCACATGAACCAGTAGTGACCTTCTGTGGCCACCTCTACTGCTGGCCATGCATCTACAAGTGGCTCCATGTCCAAAGTGATTCTCTAGCACCTGATGAGCACCCACAATGCCCCGTTTGTAAGGCTGATATATCCCAAAGCACAATGGTCCCACTCTATGGCCGGGGCCCGGCCACAGCTGAAGGGAAAACACCTTCTTGTGATGTTTTGATACCACCAAGACCACGTGCTTCATGTGATCAATCTCTATTGGCAACATCATCTCAAAGTGTTCAGCACCTTCCATATCGTAATCCTTATCAGGGTCACTATTTCAGCACTTCTCCATACCAAGAAGAGGATGATGCCACTTCACAAATGCTTGATCTTGATGCCACCATGACTCCAGGATCTCACCACCCTGTGGCTGGAATGTTTGGAGAGATGGTTTATGCCCGAATGTTTGGCAACCCAGAAAATTTGTATGCATACCCGAATTCTTATCAGATGATGGGAAGTAGTAGCCCTAGATTGAGAAGGCAAGAGATGCAGGCGCACAAATCTTTAAACAGAATTTCTATTTTCCTCTTTTGCTGCTTTCTTCTTTGTCTTATTGTCTTCTAA 711 0.4487 MAFPHYISQDLKTIPDAVTEIENSNGCFDCNICLDYAHEPVVTFCGHLYCWPCIYKWLHVQSDSLAPDEHPQCPVCKADISQSTMVPLYGRGPATAEGKTPSCDVLIPPRPRASCDQSLLATSSQSVQHLPYRNPYQGHYFSTSPYQEEDDATSQMLDLDATMTPGSHHPVAGMFGEMVYARMFGNPENLYAYPNSYQMMGSSSPRLRRQEMQAHKSLNRISIFLFCCFLLCLIVF 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0422 236 SUPERFAMILY RING/U-box 26 89 - -
Ssu1g0422 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 236 IPR045103 GO:0005783|GO:0006511|GO:0061630
Ssu1g0422 236 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Ssu1g0422 236 CDD RING-HC_AtRMA_like 28 78 - -
Ssu1g0422 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 90 IPR013083 -
Ssu1g0422 236 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Ssu1g0422 236 SMART ring_2 30 76 IPR001841 -
Ssu1g0422 236 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Ssu1g0422 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0422 Ssu-Chr1 9755997 9756707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0422 10 222 C3H Transcription Factor Family AT4G27470 42.342 9.64e-50 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0422 K10666 - gmx:100816864 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1701 5 51517471 51518190 Ssu1g0422 1 9755997 9756707 PCT