Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu1g0422 | ATGGCATTTCCGCACTACATTTCCCAGGATTTGAAAACCATCCCAGATGCTGTGACTGAGATAGAAAATTCCAATGGTTGTTTTGATTGCAACATCTGCTTAGACTATGCACATGAACCAGTAGTGACCTTCTGTGGCCACCTCTACTGCTGGCCATGCATCTACAAGTGGCTCCATGTCCAAAGTGATTCTCTAGCACCTGATGAGCACCCACAATGCCCCGTTTGTAAGGCTGATATATCCCAAAGCACAATGGTCCCACTCTATGGCCGGGGCCCGGCCACAGCTGAAGGGAAAACACCTTCTTGTGATGTTTTGATACCACCAAGACCACGTGCTTCATGTGATCAATCTCTATTGGCAACATCATCTCAAAGTGTTCAGCACCTTCCATATCGTAATCCTTATCAGGGTCACTATTTCAGCACTTCTCCATACCAAGAAGAGGATGATGCCACTTCACAAATGCTTGATCTTGATGCCACCATGACTCCAGGATCTCACCACCCTGTGGCTGGAATGTTTGGAGAGATGGTTTATGCCCGAATGTTTGGCAACCCAGAAAATTTGTATGCATACCCGAATTCTTATCAGATGATGGGAAGTAGTAGCCCTAGATTGAGAAGGCAAGAGATGCAGGCGCACAAATCTTTAAACAGAATTTCTATTTTCCTCTTTTGCTGCTTTCTTCTTTGTCTTATTGTCTTCTAA | 711 | 0.4487 | MAFPHYISQDLKTIPDAVTEIENSNGCFDCNICLDYAHEPVVTFCGHLYCWPCIYKWLHVQSDSLAPDEHPQCPVCKADISQSTMVPLYGRGPATAEGKTPSCDVLIPPRPRASCDQSLLATSSQSVQHLPYRNPYQGHYFSTSPYQEEDDATSQMLDLDATMTPGSHHPVAGMFGEMVYARMFGNPENLYAYPNSYQMMGSSSPRLRRQEMQAHKSLNRISIFLFCCFLLCLIVF | 236 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu1g0422 | 236 | SUPERFAMILY | RING/U-box | 26 | 89 | - | - | |
Ssu1g0422 | 236 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 2 | 236 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Ssu1g0422 | 236 | ProSitePatterns | Zinc finger RING-type signature. | 45 | 54 | IPR017907 | - | |
Ssu1g0422 | 236 | CDD | RING-HC_AtRMA_like | 28 | 78 | - | - | |
Ssu1g0422 | 236 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 14 | 90 | IPR013083 | - | |
Ssu1g0422 | 236 | Pfam | Zinc finger, C3HC4 type (RING finger) | 30 | 76 | IPR018957 | GO:0046872 | |
Ssu1g0422 | 236 | SMART | ring_2 | 30 | 76 | IPR001841 | - | |
Ssu1g0422 | 236 | ProSiteProfiles | Zinc finger RING-type profile. | 30 | 77 | IPR001841 | - | |
Ssu1g0422 | 236 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RMA3 | 2 | 236 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu1g0422 | Ssu-Chr1 | 9755997 | 9756707 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu1g0422 | 10 | 222 | C3H Transcription Factor Family | AT4G27470 | 42.342 | 9.64e-50 | 161 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu1g0422 | K10666 | - | gmx:100816864 | 404.831 |