Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0412 atgtacATAGCGTCTTCCATGGGAAGGTCTTTCAAGGACTCCTTGAAACTGCTTGAAGCTGATATTCACCATGCCAATACCCTGGCGTCAGATTTTCCAAGGGAATATGATGGTGCGTGCCTTCAGATGAGAATGTCATACAGTCCAGCAGCACACCTGTTTCTCTTTTTGGTGCAATGGACAGACTGCAATCTTGCTGGAGCCCTTGGACTGTTAAGAATCCTAATATACAAGGTGTATGTGGATGGAACAACTACCATGTCTACCCATGAAAGAAAAGCAAGTATTAGGGAATTCTATGCGGTCATATATCCCTCTTTATTGCAACTGCAAAAAGGGGTAACTGATACAGAGGATAAAAAACAGAAGGCTGTATGCTTGGAGAGGTATCGTAAAAGAAATGATGAGGAGCACAAACAATCCTCAGACATAGACattgaaagagaagaagaatgtGGAATATGCATGGAGATGAATAGTAAGATTGTGTTGCCCAACTGCAACCATGCCATGTGCCTGAAATGTTACCACGAATGGAGGACAAGATCACAGTCATGCCCCTTTTGTCGTGACAGTCTTAAGAGAGTAGACTCGGGCGATCTCTGGGTGTTCACCGATAGTAGGGATGTAATAGACATGGAAACAGTGACAAGGGAGAATCTTAGAAGGCTTTTCATATACATAGATAAGTTGCCTTTGATCATTCCAGACTCTCTATTTGACACATATGACTCTCACCTAAGATGA 747 0.4137 MYIASSMGRSFKDSLKLLEADIHHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLQKGVTDTEDKKQKAVCLERYRKRNDEEHKQSSDIDIEREEECGICMEMNSKIVLPNCNHAMCLKCYHEWRTRSQSCPFCRDSLKRVDSGDLWVFTDSRDVIDMETVTRENLRRLFIYIDKLPLIIPDSLFDTYDSHLR 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0412 248 PANTHER RING FINGER PROTEIN 41, 151 4 248 - -
Ssu1g0412 248 ProSitePatterns Zinc finger RING-type signature. 167 176 IPR017907 -
Ssu1g0412 248 PANTHER PEROXISOME BIOGENESIS FACTOR 10-LIKE 4 248 - -
Ssu1g0412 248 Pfam Zinc finger, C3HC4 type (RING finger) 149 195 - -
Ssu1g0412 248 SMART ring_2 152 189 IPR001841 -
Ssu1g0412 248 ProSiteProfiles Zinc finger RING-type profile. 152 190 IPR001841 -
Ssu1g0412 248 SUPERFAMILY RING/U-box 146 197 - -
Ssu1g0412 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 198 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0412 Ssu-Chr1 9592244 9596626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0412 151 230 C3H Transcription Factor Family AT2G20030 31.395 1.46e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0412 K25840 - gmx:100789769 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1714 5 51723787 51727040 Ssu1g0412 1 9592244 9596626 PCT