Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0406 ATGACTTGTGGCTGCTTTGGAGCTAAATCTATAAAGGAAAGACGCCCTTCTTATGTTGCTGGTGAAATTGATGGTTATCCCCTAGATAATGTTAAGCAATTTTCTGATAAAGAACTGAGATTGGCAACTGATAATTATCATTCAAACAATAAGATAGGACGTGGAGGTTTTGGAACCGTTTACCAGGGAACATTAAGAGATGGAAGACGTGTAGCAGTGAAGACTCTCTCAGTTTGGTCAAAGCAGGGAGTTCGTGAATTTTTGACTGAAATTAAAACTTTGTCAAATGTTAAACATCCAAACCTTGTTGAATTGATTGGATTCTGCATTCAAGGAACTAGTCGTACATTGGTCTACGAGTATGTGGAAAATGGCAACCTTAATAGTGCACTACATGGCACAAGGAATACAAACACGAAACTAGACTGGAGAAAAAGATCTGCTATTTGTGTTGGTACTGCTAAGGGTCTTGCATTTCTTCATGAAGAACTTGCACCACCTATTGTGCACAGGGACATCAAAGCTAGTAATGTACTACTTGACAGTGATTTCAATCCCAAAATAGGTGATTTTGGTTTGGCTAAATTATTTCCAGATGACATCACTCACATTAGCACAAGAATTGCTGGAACAACTGGTTACTTAGCGCCGGAATATGCATTAGGTGGCCAATTAACCAAGAAGGCTGATATATACAGCTTTGGGGTTCTTGTACTTGAAATAGTTAGTGGCAGAAGCAGCGCCAGAAGGACAAACGAGGGAGGATCACACAAATTCCTCTTGGAATGGGCCTGGCAACTTTATGAAGAGGGGAAATTGTTGGAGTTTGTAGATCCAGACATGGAAGAATTTCCTGAGGAAGAGGTAATCAGGTACATGAAGGTTGCTCTTTTCTGCACACAATCAGCAGCAAGTAGAAGACCATTGATGATACAGGTCGTTGATATGCTATCCAAGGCAATACAACTCAATGAAAAAGAACTTACAGCACCAGGATTCTTCACAAATGAAGGAGAATCCTCTAGAAAAAACTCAAACCCTGTCTTTTCAAATACCTCTTCTGATGTTACTATTACTCATGTGACCCCACGGTGA 1095 0.4009 MTCGCFGAKSIKERRPSYVAGEIDGYPLDNVKQFSDKELRLATDNYHSNNKIGRGGFGTVYQGTLRDGRRVAVKTLSVWSKQGVREFLTEIKTLSNVKHPNLVELIGFCIQGTSRTLVYEYVENGNLNSALHGTRNTNTKLDWRKRSAICVGTAKGLAFLHEELAPPIVHRDIKASNVLLDSDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTKKADIYSFGVLVLEIVSGRSSARRTNEGGSHKFLLEWAWQLYEEGKLLEFVDPDMEEFPEEEVIRYMKVALFCTQSAASRRPLMIQVVDMLSKAIQLNEKELTAPGFFTNEGESSRKNSNPVFSNTSSDVTITHVTPR 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0406 364 Pfam Protein kinase domain 46 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0406 364 ProSiteProfiles Protein kinase domain profile. 46 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0406 364 PANTHER - 1 359 - -
Ssu1g0406 364 SUPERFAMILY Protein kinase-like (PK-like) 26 317 IPR011009 -
Ssu1g0406 364 Gene3D Phosphorylase Kinase; domain 1 21 121 - -
Ssu1g0406 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Ssu1g0406 364 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Ssu1g0406 364 SMART serkin_6 46 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0406 364 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 359 - -
Ssu1g0406 364 MobiDBLite consensus disorder prediction 332 364 - -
Ssu1g0406 364 CDD STKc_IRAK 52 319 - -
Ssu1g0406 364 Gene3D Transferase(Phosphotransferase) domain 1 122 330 - -
Ssu1g0406 364 MobiDBLite consensus disorder prediction 334 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0406 Ssu-Chr1 9454662 9458135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0406 11 336 Receptor kinase-like Gene Family AT1G56120 49.697 6.06e-103 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu1g0406 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0406 - - gmx:100809588 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1724 5 51879490 51883873 Ssu1g0406 1 9454662 9458135 PCT