Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0389 ATGTATAGCATGGATTCATCTTCGGGATCTCACTCTCATCAGCACCCACAACTCCCTCCAGGGTTTCGCTTCCACCCCACAGATGAGGAACTAGTGGTTCACTACCTCAAGAGAAAAGCAGACTCTGTTCCTCTTCCTGTTGCCATCATCGCCGAGATTGATCTCTATAAGTTCGACCCATGGGAGCTCCCAAGTAAAGCCACGTTTGGTGAGCAAGAGTGGTACTTTTTCAGCCCAAGGGATAGGAAATACCCAAATGGGGCAAGGCCTAACCGGGCTGCTTTTTCTGGGTATTGGAAAGCTACCGGAACTGACAAGCCCATACTTGCATCTGATGGTCACCACAAAGTTGGAGTCAAGAAAGCCCTTGTCTTCTATGGTGGGAAGCCTCCAAAAGGGGTTAAAACCAATTGGATCATGCACGAGTACAGGCTTGTTGACAATTTCTCAAATTCTAGCTCAAAGCCACCTTCTCTGGCTGCAGATCATGCACATGGTAGCAAGAGGAACTCCTTGAGGCTTGACGATTGGGTTTTGTGCCGAATATACAAGAAAAGCAACAGTACCATCCTGCCAAGGTTACATTTGACGGAGCAGAATAAGGAGCTTTCTACGGAGAGTACTATACTACCAATGGTGTCAACTTTGTCAATTGCAAAAAACAATACCCCTCCGAATTCCAAACCCACGTCTTCGAGTGGCGCAAGTTATGGACCCCTGGGACTAGAAAATGATGATAACTTCTTTGATGGAATCTTAGGAGTTGGTCCGAGCATGCAGCAAGATGGTTCTCACTCCCACCAAGTCTCTTCAAAGGGAAACTTCCCTGTGAAACGAGTACTGTCGTCACAGTTTTGGAATGACACAGGATCATCCTCTTCAAGCAGGCGATTCCGTTGTGATCTTAATGCTGGAAGCAGCACTGTTGAAGAAGACAATTCCTTCGCTTCTCTGCTTAGCCACCTGCCACAGAACACAACGTTTCACCCAAATGCGCTTCTTGGCCCTGTTGGTAATGGTGTATTGAGGCAACAGTTTCAACTTCCAAGCATGAATTGGAATGGTTAA 1068 0.4682 MYSMDSSSGSHSHQHPQLPPGFRFHPTDEELVVHYLKRKADSVPLPVAIIAEIDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAAFSGYWKATGTDKPILASDGHHKVGVKKALVFYGGKPPKGVKTNWIMHEYRLVDNFSNSSSKPPSLAADHAHGSKRNSLRLDDWVLCRIYKKSNSTILPRLHLTEQNKELSTESTILPMVSTLSIAKNNTPPNSKPTSSSGASYGPLGLENDDNFFDGILGVGPSMQQDGSHSHQVSSKGNFPVKRVLSSQFWNDTGSSSSSRRFRCDLNAGSSTVEEDNSFASLLSHLPQNTTFHPNALLGPVGNGVLRQQFQLPSMNWNG 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0389 355 MobiDBLite consensus disorder prediction 220 238 - -
Ssu1g0389 355 Pfam No apical meristem (NAM) protein 19 145 IPR003441 GO:0003677|GO:0006355
Ssu1g0389 355 MobiDBLite consensus disorder prediction 1 15 - -
Ssu1g0389 355 MobiDBLite consensus disorder prediction 220 239 - -
Ssu1g0389 355 MobiDBLite consensus disorder prediction 1 21 - -
Ssu1g0389 355 PANTHER NAC TRANSCRIPTION FACTOR 56-LIKE 2 329 - -
Ssu1g0389 355 ProSiteProfiles NAC domain profile. 18 185 IPR003441 GO:0003677|GO:0006355
Ssu1g0389 355 PANTHER NAC TRANSCRIPTION FACTOR 56 2 329 - -
Ssu1g0389 355 SUPERFAMILY NAC domain 9 185 IPR036093 GO:0003677|GO:0006355
Ssu1g0389 355 Gene3D NAC domain 27 190 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0389 Ssu-Chr1 9018773 9020342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0389 15 354 NAC Transcription Factor Family AT1G61110 53.736 5.39e-109 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu1g0389 NAM 7.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0389 - - gmx:100806369 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1747 5 52419316 52420758 Ssu1g0389 1 9018773 9020342 PCT