Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0385 atggACACTATCTACACTTTGGTTTTTATACTTTTTCTATCTTTGAAGGCTAGTGTTTCTTCTATAGATAGACAATGGGTTGGTGTGAGGAGAATAAGTTCGGGGGATAATGGTGATCTTGTGACTAACTTGCCCGGCCAGCCTCCAGTAGATTTCCTGCACTACGCTGGATATGTCACAGTCAATGCAACCAATGGACGAGCACTCTTTTACTGGTTCTATGAGGCCATGACCAAGCCTGAAGAGAAACCATTGGTGCTGTGGCTTAATGGAGGTCCTGGGTGCTCTTCTGTGGGATATGGAGCGACACAGGAGATTGGCCCATTTTTAGTGGACACCGATGGCAAGGgccttaaatttaataacttctCATGGAACAAAGAGGCCAACATGTTATTCCTGGAATCTCCTGTTGGGGTTGGCTTTTCCTATTCCAATACAACCAGCGAATATGCACAACTCGGAGATGACTTCACAGCTAATGACGCTTACACTTTTCTGCACAACTGGTTCCTCAAGTTTCCATCATATAGAACAAGGACATTTTACATAGCAGGAGAGAGCTATGCAGGAAAGTATGTACCGGAGTTGGCAGAACTCATCCACGATAGAAACAAGGACCCTTCCCTTCACGTTGATCTCAAGGGAATTTTGctggGCAACCCTGAAACATCTGATGCTGAGGACTGGTCAGGTATGGTTGATTATGCTTGGAGCCATGCAGTGATATCTGATGAAACTTACAAAACAATCAAAGCAAGCTGTGACTTCAATAGCAGTGATCCGTGGAGTAATGAAGATTGTAGTCAAGGAGTGGATGAAATACTCAAACAGTACAATGAAATTGATATCTACAGCCTCTACACCTCTGTCTGCTTCGCCAGTACAGCACGTTCAAACGATCAATCGATGCAAACGGTGATGAATCGCTCATCTAAAATGATGCCACGGATCATGGGCGGCTATGATCCATGTTTGGATGACTATGCTAAAGCTTTTTATAATAGACCAGATGTTCAGAAGGCACTCCATGCCAGTGACGGTCACAATCTGAGGAATTGGAGTATTTGCAATAATGACATATTCAAGGGCTGGGCACAATCAAAGCCTTCTGTTATCCCAATCTACAAGAAGCTTATTTCAGCAGGACTTAGGATTTGGGTTTACAGTGGAGACACTGATGGTAGGGTGCCAGTGCTGTCAACAAGATACAGCTTAAGTATTCTAGGTTTGCCTATCACTAAGAGATGGAGGCCTTGGTACCATGAAAAGGAGGTTAGTGGGTGGTATCAAGAATATGAGGGGCTTACGTTTGCGACATTTCGGGGAGCTGGTCATGCAGTGCCTTGTTTCAAACCAAGCAACTCGCTGGCATTCttctcctcctttcttcttGGAGAATCACCACCGTCGACAAAATAA 1422 0.4318 MDTIYTLVFILFLSLKASVSSIDRQWVGVRRISSGDNGDLVTNLPGQPPVDFLHYAGYVTVNATNGRALFYWFYEAMTKPEEKPLVLWLNGGPGCSSVGYGATQEIGPFLVDTDGKGLKFNNFSWNKEANMLFLESPVGVGFSYSNTTSEYAQLGDDFTANDAYTFLHNWFLKFPSYRTRTFYIAGESYAGKYVPELAELIHDRNKDPSLHVDLKGILLGNPETSDAEDWSGMVDYAWSHAVISDETYKTIKASCDFNSSDPWSNEDCSQGVDEILKQYNEIDIYSLYTSVCFASTARSNDQSMQTVMNRSSKMMPRIMGGYDPCLDDYAKAFYNRPDVQKALHASDGHNLRNWSICNNDIFKGWAQSKPSVIPIYKKLISAGLRIWVYSGDTDGRVPVLSTRYSLSILGLPITKRWRPWYHEKEVSGWYQEYEGLTFATFRGAGHAVPCFKPSNSLAFFSSFLLGESPPSTK 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0385 473 ProSitePatterns Serine carboxypeptidases, serine active site. 184 191 IPR018202 GO:0004185
Ssu1g0385 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 134 144 IPR001563 GO:0004185|GO:0006508
Ssu1g0385 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 195 IPR001563 GO:0004185|GO:0006508
Ssu1g0385 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 436 449 IPR001563 GO:0004185|GO:0006508
Ssu1g0385 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 121 133 IPR001563 GO:0004185|GO:0006508
Ssu1g0385 473 Pfam Serine carboxypeptidase 46 464 IPR001563 GO:0004185|GO:0006508
Ssu1g0385 473 Gene3D alpha/beta hydrolase 36 294 IPR029058 -
Ssu1g0385 473 Gene3D - 325 363 - -
Ssu1g0385 473 Gene3D - 372 466 - -
Ssu1g0385 473 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 7 470 IPR001563 GO:0004185|GO:0006508
Ssu1g0385 473 PANTHER CARBOXYPEPTIDASE 7 470 - -
Ssu1g0385 473 SUPERFAMILY alpha/beta-Hydrolases 37 467 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0385 Ssu-Chr1 8887451 8892303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0385 330 467 Calmodulin-binding Proteins AT2G22960 32.374 1.99e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0385 K16297 - gmx:100819700 915.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1749 5 52529861 52533837 Ssu1g0385 1 8887451 8892303 PCT