Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0384 ATGCCTTACCAAAATTCTGTTCACAGTGATGATACCGTGTTCAATGCAGGTCAAGAGATGAAACAACTACCTGGTATTTTCCCCACTGTTGGATGTCAGGGTAATGATTTATTCAAGTGTGAGGACAGTGTTACAATTGCAAAGACTGAGAAAGCCAATTATTATCAAGGTGCTATCAATGGAACTGCCAATAACTTTCCAGTAAACATgggaaatttgaatttaaatccATTAGACAAATCTTTGTATAATGCCCAGACATCAATTGCCAGTGGAAAGCAGTATAATTGTGTTATGGGTGAAGGAGAGGGCAAAACAATTGATTATAGAAGTATTGATTCTCACCTTTTGAAAGGAAGTATTGAGAGATCCAATATTGAGGATGATTCTGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTGTAAGTCGATCAGCAGAGCTTGGGATTTCCCTTAATACATCACAATCTTCTGGAGTTGGTTATACTCATTCTTATATGGGGGGAGGTATGAGGCCAAAGGCACGTGACGAGCAGTACATATTACGAGTTGCATTGCAGGATCTATCCCAGCCAAAGTCAGAGGTTAGTCCACCAGATGGACTGCTGGCGGTTCCTCTTTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACATCAAGTTTATACTGCTCTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGAAAAACAGTGTCGACCATTGCTTTGATATTAAAGGAAAGACCTCCATTGCTGAATAAATGCAACAATGAACAAAAAAGTGAATTAGAAACTTTGAATCTGGATGCGGATGATGATCAGCTTCCTGAGAATGGTGTAGTGAAGAACGAATCTAATTTGTGTCAGGATTTGTCTAGTAGAAATCCGAACAAAAGCATGAATTTGTTAGTGCATGCAAAGGGAAGGCCATCTGCAGGAACCCTTATTGTTTGTCCAACTAGTGTCCTGCGACAATGGGCTGAGGAGTTGCACAATAAGGTAACCTGCAAAGCAAATCTCTCCGTGCTAGTGTACCATGGAAGCAATCGAACAAAAGATCCTTATGAGCTTGCCAAGTATGATGTTGTTCTGACAACTTATTCCATTGTCAGTATGGAGGTCCCTAAGCAGCCTCTGGTTGACAAAGATGATGAAGAAAAAGGAACTTATGATGATCATGCAGTACCAAGTAAGAAAAGGAAATACCCTGCTAGTGCTAGTAAAAGTGGCAAGAAGGGATTAGACAGTGCGATGCTTGAGGCTGTTGCTCGTCCTCTTGCAAAAGTGGCCTGGTTTAGAGTTGTCCTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGAGCCAAGCGTAGATGGTGCTTGTCAGGGACTCCTATCCAGAATGCAATTGATGATCTCTATAGTTACTTTCGATTTTTAAGATATGATCCTTATGCTGTGTACACATCATTCTGTTCCACAATTAAGATCCCTATCAGCAGAAATCCATCAAAAGGATATAGAAAGCTACAAGCTGtcttaaaaacaataatgttACGTCGGACAAAAGGCACACTTCTTGATGGGGAGCCTATCATTTCCTTGCCACCTAAATCTGTAGAGTTGAAAAAAGTGGAATTTTCACAGGAGGAACGTGATTTCTATTCCAGACTAGAGGCTGATTCCCGAGCACAGTTTCAGGAATATGCTGACGCTGGAACTGTGAAGCAAAACTATGTTAACATTTTGTTGATGCTTTTGCGCCTTAGACAAGCTTGTGATCATCCTCTGCTTGTCAAGCGTTACAATTCTAACTCTCTCTGGAAATCTTCAGTTGAGATGGCAAAGAAGCTTCCTGAGGAAAAACGATTATCTCTTCTAAAATGTTTAGAGGCGTCCTTGGCCCTCTGTGGTATCTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAGTTTGTGGTCATGTGTTTTGTAACCAGTGCATTTGTGAACATCTTACTGGTGATGACAATCAGTGCCCTGCTACAAATTGCAAAACTCGACTAAGCATGTCTTCAGTGTTTTCCAAAGCCACACTGAGTAGTTCTTTTTCTGATCAGGCTTGTGATAATTTGCCTGGTTACTCTGGTTGTGAAGTGGAGGAATCTGAGTTTTGTTCTCAGACTCAGCCATACGATTCTTCAAAAATTAAGGCTGCACTTGAGGTGTTGCACTCATTGTCTAAACCAAAATGCTGTGCTTCCCAAAAAAATTCTGTGCAGAGCACTTCTGGGGAAAGTACTGATGGCCTTGGTAGCTCATCTTGTGCTGACAGAATGAAATCTTTAAATGAATTTCCTGAGAATCAAAATGTGTATGAGGAGAGAAGCTCTAATAATTCAGTTGGCGTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACAAGGATGCTAGATTTGCTTGAAGCATGTCTTAAGAATTCTTCGATCCAGTATAGAAGACTTGATGGAACAATGTCAGTCACTGCACGAGATAAAGCTGTTAAAGATTTTAACACTCTCCCTGAGGTCTCAGTTATGATTATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAATATGGTCGCTGCCTGCCATGTTCTTATGCTAGATCTATGGTGGAATCCTACAACTGAAGATCAGGCAATAGACAGAGCGCATCGAATTGGACAGACTCGTCCTGTCACAGTTTTACGGTTAACTGTTAGAGATACAGTTGAAGACCGTATTTTAGCTCTGCAGCAAAAAAAGCGAAAAATGGTTGCATCTGCCTTTGGAGAGGATGGAACTGGTGGTCGTCAAAGTCGCCTTACAGTGGATGATCTAAAATACTTGTTCATGATGTGA 2889 0.4098 MPYQNSVHSDDTVFNAGQEMKQLPGIFPTVGCQGNDLFKCEDSVTIAKTEKANYYQGAINGTANNFPVNMGNLNLNPLDKSLYNAQTSIASGKQYNCVMGEGEGKTIDYRSIDSHLLKGSIERSNIEDDSDVCIIEDISHPAPVSRSAELGISLNTSQSSGVGYTHSYMGGGMRPKARDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPLLNKCNNEQKSELETLNLDADDDQLPENGVVKNESNLCQDLSSRNPNKSMNLLVHAKGRPSAGTLIVCPTSVLRQWAEELHNKVTCKANLSVLVYHGSNRTKDPYELAKYDVVLTTYSIVSMEVPKQPLVDKDDEEKGTYDDHAVPSKKRKYPASASKSGKKGLDSAMLEAVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISRNPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVEFSQEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLPEEKRLSLLKCLEASLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTGDDNQCPATNCKTRLSMSSVFSKATLSSSFSDQACDNLPGYSGCEVEESEFCSQTQPYDSSKIKAALEVLHSLSKPKCCASQKNSVQSTSGESTDGLGSSSCADRMKSLNEFPENQNVYEERSSNNSVGVGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVTARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0384 962 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 640 698 IPR013083 -
Ssu1g0384 962 MobiDBLite consensus disorder prediction 385 406 - -
Ssu1g0384 962 CDD DEXDc_SHPRH-like 209 531 - -
Ssu1g0384 962 Gene3D - 304 391 IPR038718 -
Ssu1g0384 962 Gene3D - 421 532 IPR038718 -
Ssu1g0384 962 SUPERFAMILY RING/U-box 644 690 - -
Ssu1g0384 962 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 789 957 IPR001650 -
Ssu1g0384 962 ProSiteProfiles Zinc finger RING-type profile. 647 686 IPR001841 -
Ssu1g0384 962 MobiDBLite consensus disorder prediction 385 418 - -
Ssu1g0384 962 SMART helicmild6 821 904 IPR001650 -
Ssu1g0384 962 CDD SF2_C_SNF 807 914 - -
Ssu1g0384 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 531 IPR027417 -
Ssu1g0384 962 Pfam SNF2-related domain 229 608 IPR000330 GO:0005524|GO:0140658
Ssu1g0384 962 Pfam Zinc finger, C3HC4 type (RING finger) 647 683 IPR018957 GO:0046872
Ssu1g0384 962 Gene3D - 179 273 IPR038718 -
Ssu1g0384 962 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 224 493 IPR014001 -
Ssu1g0384 962 Pfam Helicase conserved C-terminal domain 805 904 IPR001650 -
Ssu1g0384 962 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 142 961 - -
Ssu1g0384 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 539 961 IPR027417 -
Ssu1g0384 962 SMART ring_2 647 685 IPR001841 -
Ssu1g0384 962 SMART ultradead3 205 508 IPR014001 -
Ssu1g0384 962 Gene3D - 546 961 IPR027417 -
Ssu1g0384 962 ProSitePatterns Zinc finger RING-type signature. 662 671 IPR017907 -
Ssu1g0384 962 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 142 961 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0384 Ssu-Chr1 8862426 8869684 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0384 101 961 RAD5 or RAD16-like Gene Family AT1G61140 61.268 0.0 990
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu1g0384 SNF2_N 1.5e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0384 - - gmx:100805307 1738.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0384 1 8862426 8869684 Ssu1g0384 1 8862426 8869684 ECH
Ssu5g1751 5 52564008 52572372 Ssu1g0384 1 8862426 8869684 PCT