Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0376 ATGGGTAGCACGAATTTGGAGTTGCATGTTGGAATCTTTGTCACCTGCATGGTGATTCTCACCGGGACTCTCTGTGTTGGAGATACTGACATGGTTGATGTTGCTGCAATCAATAGTCTATATGTTTCTCTGGGGTCACCATCACTTCAAGGGTGGAAACCTGTGGGAGGAGATCCATGTTTGGAACTGTGGCAAGGTGTGGCTTGTGTCTTCTCCAACATAACTGCAATACACCTTGGTGGCATGAATTTGGGTGGACAGCTGGGCAGCAATTTGAATTTCCCATCCATTTTAGAAATAAACTTCATGAAGCTTTCTATTTCACCGTTGCACAGGGATCTTAGCAACAACCACATTGAAGGGCCTATTCCATTTACTTTGCCCCCTACGCTGAGGAGCTTttctCTCTCAGGAAATCGGTTAAATGGAAGCATTCCAGATGACTTGTCCTTATTAACTCAATTGTCAAACTTGGACTTGTCCAGTAACAACTTGAGTGGTCAGCTGCCTTCCTCAACAGGGAGTTTATCATCTCTTACCACATTACACTTGCAAAACAATCAACTTTCTGGGACCCTTTATGTTTTGCAAGACCTTCGTCTTCAAGATCTgAATATAGAGAACAATTTATTCTCTGGGCCAATTCCTCAAAAATTGTTGAGTATCCCTAATTTCAGCAAAAATGGGAATCCATTTAATACTACTATTATTCCATCACCTCCTGCTGCGGCCCCTGCACCCATAGCTATGGCTCCATCCCCCCAAGAATCACCTTGGAAAGTGGCATATGGTCCTTCCGCACTGACAGCACCAGTGCCTGCAAATACTAGGAAGTCATTTATGGCTAAGAGCGTCATTTGGATTGCTGGTGCAGGTTTTTTAGTATTCATTTTATTGGGAGTTTGTCTTTTAATGTTGTGGTGCATTAAGAGAAGGCCGGAGAAGAAAAATGCTAAGGAACATGATGTGGGTGTCTTTGCGGAACCTTTGAGTAAACCTACATGCGGTGACTTTGATTTTGAAGCAGCTAATCAAGAGGAGAAAGGTAAATGTGAAGTACCACATAGAAGAACAAATTTGCCAAAGATTCAGGATGAACAAGACATATATGTGAAAGTAGTATCTGCAACTTCAGAATGCAATAATGGTCATGAATCAGTCAACACCGGAGGGGGTTCCCAACTTTCATCCCTGCAGCCACCACCACAACACTTTCTCCCAACCATTCCTGGTGAGAAGGTCATTATCAATCCGGCTATAACTACCAATGTAACTGAAAGACAAGTTATGACAAATTCCATCAAAGTTTATACTGTTGCATTGCTTCAACAATATACGAATAGTTTTTCCCAAGAAAACTGTATTGGGGAAGGTACACTTGGGCCTGTTTATCAGGCTGAGCTCCCTGATGGAAAGCTATTGGCAGTGAGGAAACTGGATGCTACTGCTTCCATGGGGCAGAGTCATGAACAGTTTCTTCAATTGGTGTCCAGCATCTCAAAAATTCAGCACACAAATATTGCACGACTTGTAGGCTACTGTGCTGAGCATAGCCAACGACTACTTGTATATGAGTATTGCAGTAATGGGACCCTACATGATGCACTGCATGGGAATGATGATCACCGCATCAAACTTCCATGGACTGCACGCATTCGGGTTGCACTTGGAGCTGCAAAAGCTTTAGAGTATCTGCACGAGAACTTCCAGCCACCTATTGTGCATCGAAATTTTAGGTCTGCTAATGTTCTTCTGAATGACAATTTGGAAGTGTGCATCTCTGACTGTGGATTAGGGCCATTACTAACTGCTGGCTCTACTGGTCAGTTATCAGGACGCCTCCTTACAGCTTATGGTTACAGTGCTCCAGAATTTGAGTCTGGAAGTTATACGCAGCAAAGTGACGTCTTCAGTTTTGGTGTCGTAATGCTAGAACTCCTCACTAGACGAAAATCCTATGACAAGTCACGGCCTCGTGGAGAGCAATTTTTGGTCAGATGGGCAGTCCCTCAACTCCATGACATTGATGCATTGTCAAAAATGGTTGACCCCTGCTTAAGCGGAGCCTATCCTATGAAGTCCTTGTCACGTTTTGCAGATATTGTTTCTTCATGTGTACAGCGCGAACCTGAATTCCGGCCGGCAATGTCGGAAATTGTTCAAGATCTCTTGCGAATGATGTAG 2184 0.4354 MGSTNLELHVGIFVTCMVILTGTLCVGDTDMVDVAAINSLYVSLGSPSLQGWKPVGGDPCLELWQGVACVFSNITAIHLGGMNLGGQLGSNLNFPSILEINFMKLSISPLHRDLSNNHIEGPIPFTLPPTLRSFSLSGNRLNGSIPDDLSLLTQLSNLDLSSNNLSGQLPSSTGSLSSLTTLHLQNNQLSGTLYVLQDLRLQDLNIENNLFSGPIPQKLLSIPNFSKNGNPFNTTIIPSPPAAAPAPIAMAPSPQESPWKVAYGPSALTAPVPANTRKSFMAKSVIWIAGAGFLVFILLGVCLLMLWCIKRRPEKKNAKEHDVGVFAEPLSKPTCGDFDFEAANQEEKGKCEVPHRRTNLPKIQDEQDIYVKVVSATSECNNGHESVNTGGGSQLSSLQPPPQHFLPTIPGEKVIINPAITTNVTERQVMTNSIKVYTVALLQQYTNSFSQENCIGEGTLGPVYQAELPDGKLLAVRKLDATASMGQSHEQFLQLVSSISKIQHTNIARLVGYCAEHSQRLLVYEYCSNGTLHDALHGNDDHRIKLPWTARIRVALGAAKALEYLHENFQPPIVHRNFRSANVLLNDNLEVCISDCGLGPLLTAGSTGQLSGRLLTAYGYSAPEFESGSYTQQSDVFSFGVVMLELLTRRKSYDKSRPRGEQFLVRWAVPQLHDIDALSKMVDPCLSGAYPMKSLSRFADIVSSCVQREPEFRPAMSEIVQDLLRMM 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0376 727 Gene3D Ribonuclease Inhibitor 33 240 IPR032675 -
Ssu1g0376 727 PANTHER LEUCINE RICH REPEAT KINASE 2 9 158 - -
Ssu1g0376 727 ProSiteProfiles Protein kinase domain profile. 449 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0376 727 Gene3D Transferase(Phosphotransferase) domain 1 527 727 - -
Ssu1g0376 727 Pfam Protein tyrosine and serine/threonine kinase 452 723 IPR001245 GO:0004672|GO:0006468
Ssu1g0376 727 Gene3D Phosphorylase Kinase; domain 1 413 526 - -
Ssu1g0376 727 PANTHER LEUCINE RICH REPEAT KINASE 2 152 727 - -
Ssu1g0376 727 SUPERFAMILY Protein kinase-like (PK-like) 427 723 IPR011009 -
Ssu1g0376 727 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 152 727 - -
Ssu1g0376 727 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 9 158 - -
Ssu1g0376 727 SUPERFAMILY L domain-like 37 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0376 Ssu-Chr1 8774862 8781710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0376 23 727 Strubbelig Receptor Gene Family AT4G03390 49.157 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Ssu1g0376 PK_Tyr_Ser-Thr 5.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0376 - - gmx:100793423 1225.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1755 5 52621312 52627910 Ssu1g0376 1 8774862 8781710 PCT