Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0374 ATGGGAGCGGAGGTGATAGGGAGGTGGGGCACCTGGGAGGAGCTCCTCCTTGGTGGGGCCGTTCTCCGCCACGGAACCCGAGATTGGAACGTCGTCGCCGCCGAGCTCCGGGCCCGAACAGTTTATCCCTACACCATTACTCCTGAgGTCTGTAAAGCCAAATATGAAGACTTGCAAAAGCGGTATTCCGGGAACAAGGCTTGGTTTGAGGAGCTTAGGAAGACTAGAGTAGCAGAGTTGAAGAGAGCTCTGGAGCTATCTGAAGATTCAATTGGGTCTCTTGAATCTAAGCTTGAGAGCCTCAAGGCTGGGAAGAATGAGAAAAGAGATGATTGTCATGTTGATAAAGGATCAGGTCATCCAAAGTTACATGTAGCTTCACAGAAATTAGAGAGAGTTGAATCTTCTACTAAAGAGACATCAAAGGATGGGCTATCTGCTGGGAGTTTCACACATGAAACCAGGACAAACTGGTCTCCTGAATGTCCAGTTCCAGCTGGGTCTGCTGAAGATTTGGAGACCAAGCCTGAGGTTTCGCACTCCACCGAGCAGGTTAAAGTTTCGAATGTAGATAAGTTGGCACATACTATATCTGAAGGACAAGGAGGAAGTTTTAAAAAACGGAgagggaagaggaagaggaaggatTGTGGCAGAAATATGAAGGAAGCAAGTGTGGGGGAAAGTGACTTGTTAGATTCAGCTGATGTTGTGTCCTGGTGTAAAGAAAGTTCTACCAGCAACTGTGGTGAAGTTGCCAAATCTTGTGGTGTAGATAATCAATATAGGAACTTGAAAAAGGATAGGGTGGAAGACATGGTGAATATTTTGGATTCTATTTTTGAAACTAAAGGTGCTTCTGCCTTCCGTCGCAGACTTGATAGTCAGAAGAGAGGAAGGTACAAGAAAATGATCCGGCAGCACATGGACTTTGACACTATAAGGTCAAGAATTAGCAGCCAAACAATTAAGTCAAGTGTAGAACTTTTCCGAGACTTGCTCCTACTCACTAACAATGCCTTAGTCTTCTACTCCAAGAGCACTCGTGAATACAAATCTGCTCTACTGCTGAGAGACATAGTCACCAAAAAAATGAGGGAAAGTTTGAAGGGTACAAGCAACAAAGCCACCACTCAAGCTACTAATGTGCCTATTAAATTACCTGTGCATAATCCTCATGTGAAACCAAGAAGTGTACGGCCAGGGAACAGAAAAATAGTTGCAAAAGCAGTTGGTGGCAACAACTCTGCATCTGGGGTGTCACATGGAACTAAGAAACCTAATAAAGTTGATTCCCCATCTTCTGTGGAATCCTTAACTGTGAAGAAGAAAGGTTTTGGTCGACCAAAAAAGGTTGGACGTGGGGCTGCAGGTCAAAGGCCTGCAATACCaacgaaagaaaagaaaagagttaGGACAAAGTGA 1425 0.4344 MGAEVIGRWGTWEELLLGGAVLRHGTRDWNVVAAELRARTVYPYTITPEVCKAKYEDLQKRYSGNKAWFEELRKTRVAELKRALELSEDSIGSLESKLESLKAGKNEKRDDCHVDKGSGHPKLHVASQKLERVESSTKETSKDGLSAGSFTHETRTNWSPECPVPAGSAEDLETKPEVSHSTEQVKVSNVDKLAHTISEGQGGSFKKRRGKRKRKDCGRNMKEASVGESDLLDSADVVSWCKESSTSNCGEVAKSCGVDNQYRNLKKDRVEDMVNILDSIFETKGASAFRRRLDSQKRGRYKKMIRQHMDFDTIRSRISSQTIKSSVELFRDLLLLTNNALVFYSKSTREYKSALLLRDIVTKKMRESLKGTSNKATTQATNVPIKLPVHNPHVKPRSVRPGNRKIVAKAVGGNNSASGVSHGTKKPNKVDSPSSVESLTVKKKGFGRPKKVGRGAAGQRPAIPTKEKKRVRTK 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0374 474 Coils Coil 77 97 - -
Ssu1g0374 474 SUPERFAMILY Bromodomain 262 369 IPR036427 GO:0005515
Ssu1g0374 474 MobiDBLite consensus disorder prediction 102 139 - -
Ssu1g0374 474 Gene3D - 260 376 IPR036427 GO:0005515
Ssu1g0374 474 ProSiteProfiles Bromodomain profile. 281 351 IPR001487 GO:0005515
Ssu1g0374 474 PANTHER BROMODOMAIN PROTEIN 1 474 - -
Ssu1g0374 474 MobiDBLite consensus disorder prediction 198 221 - -
Ssu1g0374 474 CDD SANT 8 55 IPR001005 -
Ssu1g0374 474 MobiDBLite consensus disorder prediction 411 474 - -
Ssu1g0374 474 CDD Bromodomain 271 365 - -
Ssu1g0374 474 MobiDBLite consensus disorder prediction 414 439 - -
Ssu1g0374 474 SMART bromo_6 266 370 IPR001487 GO:0005515
Ssu1g0374 474 MobiDBLite consensus disorder prediction 102 163 - -
Ssu1g0374 474 MobiDBLite consensus disorder prediction 140 158 - -
Ssu1g0374 474 Pfam Bromodomain 274 354 IPR001487 GO:0005515
Ssu1g0374 474 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 1 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0374 Ssu-Chr1 8739684 8744616 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu1g0374 Bromodomain 7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0374 - - gmx:100804245 852.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1757 5 52677465 52682351 Ssu1g0374 1 8739684 8744616 PCT