Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0359 ATGGCCTCGGCTTCGTCTTCGTCCTCCAAACTCTGCTTCAATTCGGACTGCAACGAATTGAAACCCGAAAGACCTAAGAAAGGGTGGAGACTCCGTAGCGGAGAACAAGCCGAGCTATGTGATCGATGCGGCTCTGCTTTTGAAGAAGGGAGGTTCTGTGAGATTTTTCACTCAAGTGCTTCTGGTTGGAGGAGTTGTGAGACTTGTAGGAAGCGGATTCATTGTGGCTGTATTGTTTCAAGTCATGCCTTTCTGTTGTTGGATCCCGGAGGAATTGAATGTTATGCATGTGCCCGCAAAAATACTATTTTGCCATCTAACCTGCCGTGGCCACAACCTTTTTCCCTTCAAAATCGTATATCGGATAGACTTAGGGACCTATCTGCCAAAGGTTGGAGTCAGTTAGCTGGATCAGGTCCTGTACCGTGGAAGCAAGCACCCAGTCTGTTCAATTCTGCTTCTTCATCCGACCTGCTTCCAGACATGCCTTCTTTACTTGAATTATCCAATAGCTTTGACAAAATGTATTGCAATGAAAGGTTACCTGCCTCAACcttggaaaagaaaaatgaggatCTGTCTGGAATATCAGTTAATTGGAGCGTCAAGCTTGGCTCACGGGAGATGATGCTTATGAATGGAATGAGGAATGAGGACAAATCGAGTTCATGTTTAAATATGTGTCAACAGCCTCCTTCTCTAAAGGAAGATTCATCTCCTCAACCATTTGGTTTGACTGTACCTAATTCATgccaaaatgaaagaaatggtCAGCTTGGGGTAACTGGAAGTCATCCACAACAAACTCCACCACCTCCAGGAAAGCAATTTAATGGCACTATGCATTTAGCACCTGACTCATCAGTTGAGGCTCAGGTTCGCAATGGGCGGCCTCGAGCGGATACCCGAGGAAGAAACCAGTTACTGCCACGGTACTGGCCCAGGTGTACTGATCTGGAGCTACAGCAAATATCTATAGATTCTAATTCTGTAATTACTCCTTTGTTTCAAAAAACCTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTTTAGTGCTACCCAAAAAGTGTGCTGAGACCTACTTCCCACCAATTTCTCAGCCTGAAGGATTGCCACTTAAGATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAATTTCGCTTCTGGCCAAACAATAACAGCAGAATGTATGTTTTAGAGGGTGTCACTCCATGCATACAGTCCATGCAGTTGCAGGCAGGTGACACTGTAACATTTAGCCGGTTGGAGCCAGAGGGGAGGTTGGTTATGGGATTTAGAAAGGCTTCAAGTGCCGTGCTGTCCGATCAGgACAATGAAACCAGTAAGACTGGAAATGGATTTTCCGCACATAGTGAAGTTGAATTGGCTGATCCTAATTCTTGGTCTAAAGTTGATAAGTCAGGATACATAGCACAAGAAGCACTGGGGAGCAAATCTTTAATctctagaaaaagaaagagcagCATATTGGGCTCAAAGAGTAAACGtctgaaaattgaaaatgaggATTTAATAGAGCTGAAGATTACATGGCAAGAAGCTCAAGGTCTTTTGCGCCCCCCTCCTAGCCATGTTCCAAGCATCGTGGTGATTGAAGGTTTTGAATTTGAGGAATATGAGGAAGCTCCAGTGCTTGGGAAGCCAACAATTTTTACCAGTGATAGTGTGGGTGAAAAGATCCAGTGGGCTCAATGTGAAGATTGTCTGAAGTGGCGCAAATTGCCGGCAAGTGCGCTTCTTCCATCAAAATGGACATGTTCTGATAATTCATGGGATCCAGAAAGATCTTCTTGTTCAGCTGTGCAAGAGTTGACGGCAGAGCAGCTTGAGAATTTGCTACCTCCTTGTAATTCAGCTGTTTCCAAGAAAATGAAGGCCGCCAAGCAGGATCCTGATAATGCTGAAGCTTTGGAGGGACTTGACACACTTGCTAATCTAGCTATCCTGGGAGAGGGCGAGGCACTCCCAGCATCCGCCCAGGCCACAACTAAACACCCACGTCATAGACCTGGCTGctcttgcattgtttgcattCAGCCTCCCAGTGGAAAGGGTCCCAAGCATAAGCAGACATGCACATGTAATGTATGCTTAACAGTGAAGCGACGTTTCCGTACCCTTATGTTACGGCGGGAGAAGAAACAATCAGAAAAAGAAGCAGAGACAACTCGTAAAAAGCAACAGCAACAGCATCCTCCACCATTACCTTCATCTGAAATTTTGCTTGATGAAGATTCCTTGCCCTGTAGTAACACAGGTGATAGTAGCCCGAACCGGAACAAAGAGGGTAATGATGGTTCTGATGATGATCCTAACCGAATAAAATCATCTGCGTCGCCATTCAAAGGCCAGATTGACCTCAATATCCAGCCTGAACGAGAAGAAGAATTATCACCTGGTTCAGATTCTGGTGGCATGATGAAATTGCTCCGTGATGCTGCTACTGAGAGGTATCCCAACCAGCAGACTATGAACTCTGGTACTGGAGATTCATCAGGCAGTCAGTCCCAGCTGGTAGGAGATGGAATGAGGGAAGAGAAACTTAGCAATGGTGTTGCCCATGGCAGTAGTAGTAGTCATAATGCTGATAAGGAACATGCCCAATCTTTGTCTATGAATGTGTGA 2649 0.4394 MASASSSSSKLCFNSDCNELKPERPKKGWRLRSGEQAELCDRCGSAFEEGRFCEIFHSSASGWRSCETCRKRIHCGCIVSSHAFLLLDPGGIECYACARKNTILPSNLPWPQPFSLQNRISDRLRDLSAKGWSQLAGSGPVPWKQAPSLFNSASSSDLLPDMPSLLELSNSFDKMYCNERLPASTLEKKNEDLSGISVNWSVKLGSREMMLMNGMRNEDKSSSCLNMCQQPPSLKEDSSPQPFGLTVPNSCQNERNGQLGVTGSHPQQTPPPPGKQFNGTMHLAPDSSVEAQVRNGRPRADTRGRNQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSAVLSDQDNETSKTGNGFSAHSEVELADPNSWSKVDKSGYIAQEALGSKSLISRKRKSSILGSKSKRLKIENEDLIELKITWQEAQGLLRPPPSHVPSIVVIEGFEFEEYEEAPVLGKPTIFTSDSVGEKIQWAQCEDCLKWRKLPASALLPSKWTCSDNSWDPERSSCSAVQELTAEQLENLLPPCNSAVSKKMKAAKQDPDNAEALEGLDTLANLAILGEGEALPASAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEKEAETTRKKQQQQHPPPLPSSEILLDEDSLPCSNTGDSSPNRNKEGNDGSDDDPNRIKSSASPFKGQIDLNIQPEREEELSPGSDSGGMMKLLRDAATERYPNQQTMNSGTGDSSGSQSQLVGDGMREEKLSNGVAHGSSSSHNADKEHAQSLSMNV 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0359 882 CDD B3_DNA 334 435 IPR003340 GO:0003677
Ssu1g0359 882 Pfam CW-type Zinc Finger 569 611 IPR011124 GO:0008270
Ssu1g0359 882 MobiDBLite consensus disorder prediction 752 768 - -
Ssu1g0359 882 MobiDBLite consensus disorder prediction 859 882 - -
Ssu1g0359 882 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 7 812 - -
Ssu1g0359 882 SUPERFAMILY DNA-binding pseudobarrel domain 333 435 IPR015300 -
Ssu1g0359 882 SMART B3_2 336 437 IPR003340 GO:0003677
Ssu1g0359 882 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 7 812 - -
Ssu1g0359 882 MobiDBLite consensus disorder prediction 718 882 - -
Ssu1g0359 882 MobiDBLite consensus disorder prediction 218 280 - -
Ssu1g0359 882 Pfam B3 DNA binding domain 336 435 IPR003340 GO:0003677
Ssu1g0359 882 MobiDBLite consensus disorder prediction 218 265 - -
Ssu1g0359 882 ProSiteProfiles B3 DNA-binding domain profile. 336 437 IPR003340 GO:0003677
Ssu1g0359 882 Gene3D - 568 621 - -
Ssu1g0359 882 MobiDBLite consensus disorder prediction 718 734 - -
Ssu1g0359 882 MobiDBLite consensus disorder prediction 824 847 - -
Ssu1g0359 882 Coils Coil 718 738 - -
Ssu1g0359 882 ProSiteProfiles Zinc finger CW-type profile. 564 614 IPR011124 GO:0008270
Ssu1g0359 882 Gene3D - 314 440 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0359 Ssu-Chr1 8552515 8563597 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0359 267 722 B3 DNA Binding Superfamily AT4G32010 56.114 2.91e-166 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu1g0359 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0359 - - gmx:100782114 1636.31