LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu1g0356	ATGTATttgtatctatattttatttttctaatgctcaaaataaaatacagttCTTCTCCCAAGAGCATAGAAGGCCCTGATGACAGCAGTCTACAATTACAATTCAGGACCAGGTTATCCCTTCCCCTCTTCACTGGTGGGAAAGTGGAGGGAGAGCATGGCACTGCCATACACATTGTTTTGATTGATACTAAAACAGGCCATGTTGCCACATCTGGCCCAGCTTCATGTGTCAAACTAGATGTTATTGTACTTGAAGGAGATTTCAATAATGAGGATGATGATAATTGGAGTGAAGAAGATTTTGATAGTCATGTAGTTAAAGAGCGAGAAGGGAAAAGACCTCTTCTGACTGGTGATCTGCAAGTGACGCTGAAGGATGGTGTAGGAACACTGGGTGAGCTTACATTTACGGACAACTCTAGCTGGATAAGGAGTAGGAAGTTCAGGCTGGGGCTCAAAGTTTCCTCAGGTTGTTATGAGGGAATGCGTATTCGTGAAGCCAAAACAGAGGCTGTCACTGTTAAGGATCACCGTGGAGAATTATACAAGAAACACTACCCACCTGCCTTGAATGATGAGGTCTGGAGACTGGAGAAGATTGGCAAGGATGGTTCCTTTCACAAAAGGCTAAATAAAGCAGGAATATATACAGTTGAAGATGTCGTACGACTTGTGGTCAGAGACCCACAGAGATTGCGAAATATTCTTGGGAGTGGCATGTCAAACAAAATGTGGGATGTTCTTGTTGAGCATTCAAAGACCTGTGTTCTCAGTGGAAAACTCTATGTCTACTATCCCGATGATGCGAGGAACGTCGGTGTTGTTTTCAATAACATCTATGAGTTGAGTGGTTTAATTGCCAATGACCAATATTACTCTGCTGATTCTCTCTCCGACAGTCAAAAGGTTTATGTGGACACATTGGTAAAGAAGGCTTATGAGAATTGGATGCATGTTATTGAGTATGATGGCAAGTCTCTGTTAAATCAGAATAAGACTTTGGGCACCTCCCAACCTCTGGCTCCAATAGGTTCCCACGattattcaatttcaaactCACTTGATCAGCAGACCTCCATACCAAGTCTACCAGTTCCTGTACCTACTGGGCAGTCTTCAATGGATCCGGGAGTAACAGTTGGAGGTTATCATAATGGTACGACCACCAGATGCTCAATGCAACCACAGAGTGATAATCTTAATTCTTCTATTCAGTTTGATAGTACTGCATTCCCGCTGCAAAACCAGCTAATGAGTGCTTCACACCAATCTCAACTTCCGAGAAATGAAAATGGGATGACTCTTGGTCCACGACAATCAGCCACTCCTGGCTTTCAGAATGTCGGCATTTCAAATCCTACTTATAGAGGATTTGAGGACTACTTCCCGGAGGAGGAGATTCGAACTAGAAGTCATGAGATGCTAGAAAATGAAGATATGCAGCATCTGCTCCGAATTTTTAATATGGAAGGGCAATCTCATGCTTCCTTTAATGCTCCAGAAGATGCATACCCTTATTCATCTGCTTACATGCCTGCAGCCTCCATGAGCTACAAGTTAGATGATGAACGAAACCGTTCCTCAGGAAAGGCTGTTGTGGGCTGGCTCAAGCTTAAGGCAGCTTTGAGATGGGGCATTTTTATTCGGAAGAGGGCTGCTGAGAGACGGGCACAACTTGTTCAGTTGGATGACCCATAG	1701	0.4256	MYLYLYFIFLMLKIKYSSSPKSIEGPDDSSLQLQFRTRLSLPLFTGGKVEGEHGTAIHIVLIDTKTGHVATSGPASCVKLDVIVLEGDFNNEDDDNWSEEDFDSHVVKEREGKRPLLTGDLQVTLKDGVGTLGELTFTDNSSWIRSRKFRLGLKVSSGCYEGMRIREAKTEAVTVKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKAGIYTVEDVVRLVVRDPQRLRNILGSGMSNKMWDVLVEHSKTCVLSGKLYVYYPDDARNVGVVFNNIYELSGLIANDQYYSADSLSDSQKVYVDTLVKKAYENWMHVIEYDGKSLLNQNKTLGTSQPLAPIGSHDYSISNSLDQQTSIPSLPVPVPTGQSSMDPGVTVGGYHNGTTTRCSMQPQSDNLNSSIQFDSTAFPLQNQLMSASHQSQLPRNENGMTLGPRQSATPGFQNVGISNPTYRGFEDYFPEEEIRTRSHEMLENEDMQHLLRIFNMEGQSHASFNAPEDAYPYSSAYMPAASMSYKLDDERNRSSGKAVVGWLKLKAALRWGIFIRKRAAERRAQLVQLDDP	566

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu1g0356	566	Pfam	Calmodulin binding protein central domain	190	256	IPR046830	-
	Ssu1g0356	566	PANTHER	OS02G0177800 PROTEIN	13	564	IPR012416	GO:0005516
	Ssu1g0356	566	Pfam	Calmodulin binding protein-like N-terminal domain	31	178	IPR046831	-
	Ssu1g0356	566	Pfam	Calmodulin binding protein C-terminal domain	261	323	IPR046829	-
	Ssu1g0356	566	PANTHER	CALMODULIN-BINDING PROTEIN	13	564	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu1g0356	Ssu-Chr1	8409943	8412992	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu1g0356	18	561	Calmodulin-binding Proteins	AT5G57580	59.325	0.0	653

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu1g0356	-		-	gmx:100802994	1004.59

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu5g1770	5	52916960	52922211	Ssu1g0356	1	8409943	8412992	PCT