Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0349 atgccgAGTATCACTTTCTTCCAGCGTCTTTCTGGAGCTTTCCGTGACAATCAGTCACATCTTAAGCTTGTATTGCTCTGCACCGCCGTAAGTGGCGGTGGTCTTTTGGCTTATGGTGAGAGTGTTGCACCTGAAGAGGCGGTCACCGAGAAGAAAAAGGTGGTGGTGCTGGGAACTGGTTGGGCGGCCACAAGTTTCATGAAGAATCTGAACAATCCGAAATATGAGGTTCAAGTAGTTTCGCCTCGTAACTACTTTGCATTCACTCCTTTGCTGCCCAGCGTTACGTGCGGCACCGTCGAGGCGCGCAGCATTGTCGAGCCTGTTCGCAATATTTTTAAGAAGAAAAAGGTGGACATCCAATTCAGTGAAGCAGAATGTTTCAAGATTGATGCAGAAAATAGGAAAGTTTACTGTCGATCTAGTGTGAACAATAATTTGAATGCGAAAGAAGAATTTGTCGTGGATTATGACTACCTAATAATCGCCGTGGGCGCTAATGTGAACACATTTAATACTCCAGGAGTGATGGAGAATTGCCATTTTTTGAAGGAAATTGAAGATGCTCAAAAGATTAGAAGAACAGTTATTGACTGCTTCGAGAGAGCAAATTTGCCTGATGTAagtgaagaagagaagaagagaattCTTCATTTTGCTATTGTTGGAGGTGGGCCTACTGGAGTGGAGTTTGCAGCCTCACTTCATGATTTTGTCAATGAGGATTTGGTCCGTTTATATCCTGGGATAAAAGATTTAGTTAAAATCACACTTCTGGAGGCCGGAAATCATATCTTGGGCATGTTTGACAAGAGAATCACTGCTTTTGCTGAAGACAAGTTTCGAAGAGATGGGATTGATGTGAAAACAGGATCTATGGTTGTTAAGGTATCTGAGAAAGAAATTTCCACAAAAGAACTGAAAAATGGAGGAGAGATTAAGACAATTCCGTATGGAATGGCTGTCTGGTCAACTGGTATTGGCACTCGTCCatttattaaagattttatgaCACAAATCGGTCAGGCTAGCAGGCGTGCTCTAGCTACAGACGAATGGTTGAGAGTTGAAGGGTGCAACAATGTGTATGCACTCGGTGATTGTGCTACGATAAACCAGCGAAAAGTCAtgGAAGATATTGCGGCGATCTTTAAGAAGGCTGACAAGGACAATTCTGGAACACTTACGGTCAAAGAATTTCAAGAGGTCATGAAAGATATCTGTGAAAGATACCCTCAGGTTGAGCTATATCTGAAGAATAAACAGATGCGCGACATTGCTGATTTATTGAAGGATGCGAAGGGAGGTGAcaaaaaagaatcaattgaaCTGAATATAGAAGAAGTCAAAACAGCACTTTCCAAAGTGGATTCTCAGATGAAATTTCTTCCTGCTACAGCCCAGGTTGCATCTCAGCAAGGCACTTACCTGTCCAAGTGTTTTGACCGGATGGAAGAGAGTGAAAAAAATCCAGAGGGTCCTCTCAGGTTCAGGGGAGAAGGTCGCCATCGGTTCAAACCCTTTAGGTACAAGCATTTAGGTCAATTCGCTCCTTTGGGAGGAGAGCAGACGGCTGCCCAGCTTCCTGGAGATTGGGTTTCGATTGGCCATAGCAGTCAATGGCTGTGGTATTCTGTCTATGCAAGCAAGCAAGTAAGCTGGCGTACAAGAGCGTTAGTAGTTTCAGACTGGACAAGACGTTTTATTTTTGGAAGGGACTCAAGTAGCATTTGA 1734 0.4227 MPSITFFQRLSGAFRDNQSHLKLVLLCTAVSGGGLLAYGESVAPEEAVTEKKKVVVLGTGWAATSFMKNLNNPKYEVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIFKKKKVDIQFSEAECFKIDAENRKVYCRSSVNNNLNAKEEFVVDYDYLIIAVGANVNTFNTPGVMENCHFLKEIEDAQKIRRTVIDCFERANLPDVSEEEKKRILHFAIVGGGPTGVEFAASLHDFVNEDLVRLYPGIKDLVKITLLEAGNHILGMFDKRITAFAEDKFRRDGIDVKTGSMVVKVSEKEISTKELKNGGEIKTIPYGMAVWSTGIGTRPFIKDFMTQIGQASRRALATDEWLRVEGCNNVYALGDCATINQRKVMEDIAAIFKKADKDNSGTLTVKEFQEVMKDICERYPQVELYLKNKQMRDIADLLKDAKGGDKKESIELNIEEVKTALSKVDSQMKFLPATAQVASQQGTYLSKCFDRMEESEKNPEGPLRFRGEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVSDWTRRFIFGRDSSSI 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0349 577 Pfam EF hand 380 406 IPR002048 GO:0005509
Ssu1g0349 577 SUPERFAMILY FAD/NAD(P)-binding domain 218 372 IPR036188 -
Ssu1g0349 577 SMART efh_1 379 407 IPR002048 GO:0005509
Ssu1g0349 577 ProSitePatterns EF-hand calcium-binding domain. 388 400 IPR018247 -
Ssu1g0349 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 218 236 - -
Ssu1g0349 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 28 47 - -
Ssu1g0349 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 157 175 - -
Ssu1g0349 577 PANTHER NAD(P)H DEHYDROGENASE B2 3 577 - -
Ssu1g0349 577 ProSiteProfiles EF-hand calcium-binding domain profile. 375 410 IPR002048 GO:0005509
Ssu1g0349 577 Gene3D - 424 576 - -
Ssu1g0349 577 Gene3D - 42 423 - -
Ssu1g0349 577 SUPERFAMILY FAD/NAD(P)-binding domain 51 270 IPR036188 -
Ssu1g0349 577 SUPERFAMILY EF-hand 368 464 IPR011992 -
Ssu1g0349 577 Pfam Pyridine nucleotide-disulphide oxidoreductase 52 377 IPR023753 GO:0016491
Ssu1g0349 577 PANTHER NADH DEHYDROGENASE 3 577 IPR045024 GO:0003954|GO:0006116
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0349 Ssu-Chr1 8248637 8255073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0349 1 577 Chloroplast and Mitochondria Gene Families AT4G21490 73.242 0.0 867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0349 K03885 - gmx:100797657 1095.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1778 5 53080565 53085320 Ssu1g0349 1 8248637 8255073 PCT