Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0348 ATGGGTGACGAACAACCGTCGACCACCGCCGGCACGGGTCTCCGGCGAGCTGTCGCGCTTATCTCTTCCCTgatctccctctccctctcgaTCAGGGTCTTCGCCGGAAAGTGGCAACTGATTCGAGTCAAGCTCGAGGAGCTCCACTCGGGGCTCGTCGCCGGCGATGCCCGGTTACTCTCCGGCGAGCTCCCGGCGATAACGGGCACGGCGGAGGAGTGCCGCGAGCTGGCGCGGCGCTGCGTGGATCTGTCCTACAGCGGGAAGCTTTTGATGCAGAGCGATTTGGACGTGACGTTGGGGAAGCTGGAAGCGCACGTGAAGAAGCTATCTGAGGTGTTCAAGAAGGGTGTGTCGATGCATGGCTACGCCGTCGTAGTTTCAAAGCCTGGCTTCGGAGCTTGCAAGGATGACATGAGGTTCTACCTGAGGGACTTAATGACTAGGATGAAGGTTGGCGATTTGGGTATGAAGAAGCAAGCGCTGATGAACTTGCATGAGGCTGTTGTGGAGGATGACAAGTATGTGAAGTTGGTTGTTGAGGTTTCTGAGTTTGTTCACGTGTTGGTGGATTTTCTTGGTTGCAATGAGGTTGAGGTTGCTGAGGAGGCTGCCAAGGTTGTTTCTGTTGTTGCGgggtttgattcttataaaGGGGTTCTGGTTGGTGCTGGGATTGTTGCCCCTTTGGTTCGGGTTTTGGAATGTGGGAGTGAGGCGGGGAAGGTTGGTGCCGCGAGGTGTTTGCAAAGGTTGACCGAGAATTCGGATAATGCGTGGTGTGTTTCGGCTCACGGGGGTGTCACTGCCTTGTTGAGGATTTGTGAGAGTGCGGGGTGTAAAGGGGAATTGGTTGGTGCCTCTTGTGGGGTGTTGAGGAATCTTTGTGGGGTTGAAGAAATTAAGAGGTTTGTGGTTGAGGAGGGTGCGGTTTCCACGTTTGTGAGGCTTGTGAGGTCTAAGGATGAAGCAGTTCAGGTGAGTTCTGTGGAGTTGATTCAAAACATTGCCTCTGGGGATGAGTTGGTTAGGCAGATGGTGGTTAGAGAAGGTGGGGTTCGTGTTCTTTTGCGTGTTTTGGATCCGAAGTGGACGTGTTCGTCTAAAACAAGAGAGGTTCTGATGAGGGCTATTGAgaatttgtgtttttcttcgCCTAGTTGTGTTAGCGTTTTGATGAGTTATGGCTTTGTGGACCAGTTGTTGTACTATGTTCGAAATGGGGAGGTTTCGATTCAAGAGTTGGCCCTCAAGGTGGCGTTTAGATTGAGTGAAACATCGGAGGAGGCTAAGAAAGCGTTGGGTGATGCGGGCTTCATGGCTGAGCTTGTGAAGTTTCTGAATGCAAAGTCGTTTCAAGTTCGGGAAATGGCAGCAGAGGCACTCTCTGGCATGGTTATGGTGGCAAAAAATAGGAAGAGGTTTGTGCAGGATGACCAAAACATTGCTCTTCTTCTGCAATTGCTGGATCCAGGGAAGGGGAACTCAGGTAATAAGAAGTTGTTGATCTCTATCTTAATGTCACTAACAAGTTGCAACAGTGGgaggaaaaaaattgtgagtTCTGGGTATGCCAAAAACATAGAGAGGCTTGCAGAAGCTGAGGTTTCTTCTGATGCCAAGAGGCTCGTGAGGAAGCTATCCGCAAACCGGTTCCGCAGTATGTTGAGTGGAATCTGGCACTCTTGA 1689 0.4926 MGDEQPSTTAGTGLRRAVALISSLISLSLSIRVFAGKWQLIRVKLEELHSGLVAGDARLLSGELPAITGTAEECRELARRCVDLSYSGKLLMQSDLDVTLGKLEAHVKKLSEVFKKGVSMHGYAVVVSKPGFGACKDDMRFYLRDLMTRMKVGDLGMKKQALMNLHEAVVEDDKYVKLVVEVSEFVHVLVDFLGCNEVEVAEEAAKVVSVVAGFDSYKGVLVGAGIVAPLVRVLECGSEAGKVGAARCLQRLTENSDNAWCVSAHGGVTALLRICESAGCKGELVGASCGVLRNLCGVEEIKRFVVEEGAVSTFVRLVRSKDEAVQVSSVELIQNIASGDELVRQMVVREGGVRVLLRVLDPKWTCSSKTREVLMRAIENLCFSSPSCVSVLMSYGFVDQLLYYVRNGEVSIQELALKVAFRLSETSEEAKKALGDAGFMAELVKFLNAKSFQVREMAAEALSGMVMVAKNRKRFVQDDQNIALLLQLLDPGKGNSGNKKLLISILMSLTSCNSGRKKIVSSGYAKNIERLAEAEVSSDAKRLVRKLSANRFRSMLSGIWHS 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0348 562 Gene3D - 143 551 IPR011989 -
Ssu1g0348 562 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 266 310 IPR000225 GO:0005515
Ssu1g0348 562 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 5 562 - -
Ssu1g0348 562 SMART arm_5 298 338 IPR000225 GO:0005515
Ssu1g0348 562 SMART arm_5 427 467 IPR000225 GO:0005515
Ssu1g0348 562 SMART arm_5 255 297 IPR000225 GO:0005515
Ssu1g0348 562 SMART arm_5 214 254 IPR000225 GO:0005515
Ssu1g0348 562 SMART arm_5 172 213 IPR000225 GO:0005515
Ssu1g0348 562 SMART arm_5 340 383 IPR000225 GO:0005515
Ssu1g0348 562 Pfam Armadillo/beta-catenin-like repeat 300 338 IPR000225 GO:0005515
Ssu1g0348 562 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 5 562 - -
Ssu1g0348 562 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 309 352 IPR000225 GO:0005515
Ssu1g0348 562 SUPERFAMILY ARM repeat 144 542 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0348 Ssu-Chr1 8224122 8225810 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0348 126 416 U-box Gene Family AT2G23140 23.729 1.06e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0348 - - gmx:100783537 972.23