Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0343 ATGGGGAGAGCACCCTGTTGTGACAAAAACGGCCTCAAGAAAGGGCCATGGACAACCGAGGAGGACCAGAAACTCGTTGATTACATTCAGAAACATGGATATGGCAATTGGAGGACACTCCCAAAGAATGCTGGGTTACAAAGATGTGGAAAGAGTTGCCGCCTCCGTTGGACAAACTATCTCCGACCAGATATTAAGCGAGGTCGTTTTTCATTCGAAGAGGAGGAGACAATAATTCAGCTACATAGCATTCTTGGCAACAAGTGGTCTGCGATTGCATCTCGCTTACCAGGAAGGACAGACAATGAAATCAAGAACTACTGGAACACCCACATTAGAAAAAGGCTTCTGAGGATGGGAATTGACCCTGTGACACACAGTCCTCGACTTGATCTATTGGACATCTCCTCCATTCTAAACGCATCTTTCTATGGCATGCAGCAGTACTCATTGGTGAACCCCGAGCTTTTAAGGTTGGCATCTTCAATCATCTCCCCCTCACAGCAACACAAAGACCTTGACATGTGTGCTCAAAAGGGTCAACAGAGCCAGCTATGCGATCCCCAAATTCAGAACCATGCTCCACACGTTGTCCAATTTCAAGATCCAGTTCAAGAAGTGCCTGAATGCACCATGTTCAGCACCCCTTGTGTTTCATTGCCTCTAACTCAACCACAGTTGGTTGAGGACCCATACCCATCATCAAGTTTCACAGACTTCAGGTACCAACAACATTCTCATGATCACCTAAGTGACTGGCACGAAAATGGGATTGCATTAAGCACCTTAACAGATGACTGTATCCCTCCGTTATCAAgctacaattattataattctgATAGTCAAAATCTCATGTATCCTCCACCGTCCGAACCTTCAATCTTCCATTCCAACAACAGCAATCAGAACTTCAGCTTCGCTTCAGTTCTATCGACACCTTCGTCAAGCACCACACCGTTGAATTCCAACTCCACGATAATCAATGGGGGCAACACAGAAGATGAGAGGGATCAAAGCTATGACAGTAGTAAcatgttgaaatttgaaatccCAGATATTTTAGATGTGAATGAGTTCATGTAA 1083 0.4358 MGRAPCCDKNGLKKGPWTTEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDISSILNASFYGMQQYSLVNPELLRLASSIISPSQQHKDLDMCAQKGQQSQLCDPQIQNHAPHVVQFQDPVQEVPECTMFSTPCVSLPLTQPQLVEDPYPSSSFTDFRYQQHSHDHLSDWHENGIALSTLTDDCIPPLSSYNYYNSDSQNLMYPPPSEPSIFHSNNSNQNFSFASVLSTPSSSTTPLNSNSTIINGGNTEDERDQSYDSSNMLKFEIPDILDVNEFM 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0343 360 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu1g0343 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu1g0343 360 CDD SANT 69 112 IPR001005 -
Ssu1g0343 360 MobiDBLite consensus disorder prediction 313 339 - -
Ssu1g0343 360 CDD SANT 16 61 IPR001005 -
Ssu1g0343 360 PANTHER TRANSCRIPTION FACTOR MYB74 1 351 - -
Ssu1g0343 360 Gene3D - 69 116 - -
Ssu1g0343 360 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 351 - -
Ssu1g0343 360 MobiDBLite consensus disorder prediction 313 333 - -
Ssu1g0343 360 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Ssu1g0343 360 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu1g0343 360 SMART sant 13 63 IPR001005 -
Ssu1g0343 360 SMART sant 66 114 IPR001005 -
Ssu1g0343 360 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ssu1g0343 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu1g0343 360 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu1g0343 360 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0343 Ssu-Chr1 8170909 8172248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0343 1 360 MYB Transcription Factor Family AT4G21440 53.125 4.18e-114 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu1g0343 Myb_DNA-binding 8.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0343 K09422 - gmx:778071 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1783 5 53406876 53407851 Ssu1g0343 1 8170909 8172248 PCT