Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0341 ATGGCATGTCCAGTTTGTCGAGGGACTTGCACCTGTAAAGATTGCTTGGCAAGTCAATACAAAGACACTGAAAGTAAGGAATATTTGTCTGATAAAAACAGAGTTGATAGGATATTGCATTTTCATTATTTGGTCTGTATGCTCCTTCCTgtactaaaacaaataaaagaagacCACCATGTGGACATAGAAACAAAAGCGATAATTAAAGGGAAAAGAAATTCTGATATTCTCATCAAGCCAGTTGATTTTGGTTGCAATGAGAAAAATTACTGCAATTACTGCAAAACACCCATTCTTGATCTTCATAGAAGCTGCCTTAGTTGTTCCTACAATCTTTGCTTAAGTTGTTCTCATGCATTAAGTCAAGGAAGCACCTCTGAAGAAATCAACTCTTCTATATCCAAGCTACCTGACAAAATAAATGCTTGCATTTCTAGAGAAAGTCACCTTTTGGATGATAAGGCCATTTCTAATGGCAATTTAATTGATGCCTCAACATTAACTGAGTGGACAAGTTGTAATGGTATTGACATTGTATCATGCCCACCTACAAAGCTTGGTGATTGTGGTGATAGCCACCTtgatttgaaatatgtttttcccTTAAGTTGGATCAAAGAAATGGAAGTTAAGGCAGAAGAAATAGTTTGCAGCTATGACTTTCCTGAAACTTTGGATAAAAGTTCAAGCTGCTCACTGTGTGTTGACAAAGATCATAAAATTAACAGATACAAGCAGTTACAGGAAGCGTCTCAAAGAGAAGATTCTAatgataattacttattttatcctaCAGTTTTGGATATCAGTAGCAATCATTTTGAACACTTTCAGAAACATTGGGGAACAGGCCATCCTGTAGTAGTGCGAGATGTGCTCCAAATTACACCAAACCTTAGTTGGGATCCACTGGTCTTGTTCTGTACTTATCTTGAGAGGAGCATGACAAGATATGAGAATAATAAGGACTTACTTGAAGCTTGTTTGGATTGGTTTGAGGTGGAGATTAACGTTAGGCAGTATTTTACTGGGTCTCTTAAATGTCAACCTCAGAAAAATACTTGGCATGAGATGCTGAAACTTAAAGGGTGGTTGTCTTCCCAACTATTCAAAGAACAGTTTCCAGCTCATTTTGCTGAAGTAATTGATGCTCTTCCAATTCAAGAATACATGAATCCCTTGTCTGGTCTTCTGAATTTAGCTGCAAATTTGCCTCAGGGGAGTACAAAACATGACATAGGACCATATGTTTATATTTCATATGGATGTGCTGAAGAAGAAGCTGATTCTGTGACAAATCTCTGTTACAATTCATATGACATGGTTAATATTATGGCACATACCATGGACATCCCCCTCTCTATAGATCAGCTTTCTAAAATAAGTAAGTTATTGAAAAAACACCAAGCCCTATGTCAAAAAGTGCCTTCTAAAATTACTACTAAGCATGCAGAAGACAGGGAACAAAATGAAATGCATAGTATAATAAGAGAAGGAACTGACTTTTTAAGGAGAGTCCATAGAACATCTTGCATCTCTACTGAAGCCAGAACAATATCTAATCAGAATTTAGATGGCAATATTTCCGGTGATGAAGAATGTGTTTCCAATTCTGAAACTGGAAAGGCACAAAGCTCTTTACCTTTCCATGGGACAATTCCAAGCACTGAAATGTCTCCCGATCATAATCCTCCCTTTGAAAACCCAAACAGTGATAGAAGGAAGAAGTTTACTGAGAATTCTGGTGCCCAATGGGATGTCTTTCGAAGACAGGATGTGCCAAAGCTCTTAGAATACCTTGAAAGACACTCTGATGAATTTTCTTATACTAGTGAACATCATGAGAAGATGGTTCATCCAATTCTAGATCAGAGCTTCTTTCTTGACAATACTCACATGATGAGACTTAAGGAGGAGTTTAAAATTGAACCATGGACTTTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTTCTGGATGTCCATACCAGATTAGGAATCCTAAGTGTTGTGTTCATGTGGAATTGGAATTTGTGTCCCCTGAGAATGTTACTGAGTGTATCCAATTGATTGATGAGGTCCAGCTGCTTCCAAAAGACCATAAAGCAAAAGTAGAAAAGCTGGAGGTGAAAAAAATGGCCCTTTATAGCATGAGTACAGCAATAAAAGAAATACGTGAGCTTACATGCAAAACATGA 2202 0.3665 MACPVCRGTCTCKDCLASQYKDTESKEYLSDKNRVDRILHFHYLVCMLLPVLKQIKEDHHVDIETKAIIKGKRNSDILIKPVDFGCNEKNYCNYCKTPILDLHRSCLSCSYNLCLSCSHALSQGSTSEEINSSISKLPDKINACISRESHLLDDKAISNGNLIDASTLTEWTSCNGIDIVSCPPTKLGDCGDSHLDLKYVFPLSWIKEMEVKAEEIVCSYDFPETLDKSSSCSLCVDKDHKINRYKQLQEASQREDSNDNYLFYPTVLDISSNHFEHFQKHWGTGHPVVVRDVLQITPNLSWDPLVLFCTYLERSMTRYENNKDLLEACLDWFEVEINVRQYFTGSLKCQPQKNTWHEMLKLKGWLSSQLFKEQFPAHFAEVIDALPIQEYMNPLSGLLNLAANLPQGSTKHDIGPYVYISYGCAEEEADSVTNLCYNSYDMVNIMAHTMDIPLSIDQLSKISKLLKKHQALCQKVPSKITTKHAEDREQNEMHSIIREGTDFLRRVHRTSCISTEARTISNQNLDGNISGDEECVSNSETGKAQSSLPFHGTIPSTEMSPDHNPPFENPNSDRRKKFTENSGAQWDVFRRQDVPKLLEYLERHSDEFSYTSEHHEKMVHPILDQSFFLDNTHMMRLKEEFKIEPWTFEQHVGEAVIIPSGCPYQIRNPKCCVHVELEFVSPENVTECIQLIDEVQLLPKDHKAKVEKLEVKKMALYSMSTAIKEIRELTCKT 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0341 733 MobiDBLite consensus disorder prediction 554 577 - -
Ssu1g0341 733 Pfam JmjC domain, hydroxylase 582 679 IPR003347 -
Ssu1g0341 733 Gene3D Cupin 266 705 - -
Ssu1g0341 733 PANTHER PROTEIN B160 1 732 - -
Ssu1g0341 733 SUPERFAMILY Clavaminate synthase-like 273 717 - -
Ssu1g0341 733 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1 732 IPR045109 GO:0032454|GO:0033169
Ssu1g0341 733 ProSiteProfiles JmjC domain profile. 394 696 IPR003347 -
Ssu1g0341 733 SMART cupin_9 375 696 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0341 Ssu-Chr1 8103527 8107862 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Ssu1g0341 JmjC 5.5e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0341 K15601 - gmx:100802129 1339.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1787 5 53467713 53470302 Ssu1g0341 1 8103527 8107862 PCT