Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0338 ATGGCACCGTTTAATATGTCAGATAGATCTATAATTTGCTATACACCAAGCATGACAACAACAAATGGTTTATGGCAGGGAGATAACCCTTTAGATTACTCCCTTCCTCTCTTTGTCTTGCAATTAACGTTAGTTGTCTGCGCCACACGTTTCTTTGTTTTCATCCTCAAGCCCTTTCACCAACCGCGTGTAATTGCTGAAATCCTGGGTGGATTGCTATTGGGTCCATCAGGGCTtggtagaaataaaaaatttgccaATGCTGTATTCCCTCTGAAAAGTGAGATGGTGATGGAGACAATGGCAAACATGGGTCTCATATACTTCCTCTTCCTGGTCGGGCTAGAAATGGACATTTTGATTATCAAACGCACTGGGAAAAAGATCGTGTCCATAGCCCTTGCTGGCATGATATTGCCCTTTATGGTCGGTGTTTGTGTCTCCTCTTTAATCGATGACAAAGACAAAAACATTAACCAAAGCGGCTATGTCCTCTATCTTGGTATTGTTCTATCTGTCACTGCATTCCCGGTGCTAGCTCGCACGCTTGCCGAGCTCAAACTCATCAGCACAGAGTTAGGAAAGCTTGCTCTCTCAACTTCTCTCGTCAATGATGTGTGTGCCTGGATGTTGCTGGCTCTAGCTATTGCTTTATCAAAGCAAAATACTAGCAATTGGGCCTCGGTCTGGGTTGTGTTATCAAACCttgcttttgtttctttctgCCTTCTTGTTGTTAGACCAGCGGTCTCGTGGTTGATCAAGAGAACCCCAGAAGGGAAGCCCTTCAGTGAGTTCCAAATATGCATTGTGCTCATTGGTGTTATGATCTCAGCCTTCATTACAGATGTCCTTGGAACACATTCTGTTTTTGGAGCTTTTGTATATGGACTAGTGATTCCAAATGGCCCACTTGGAGCTGCTATAATAGAGAAGCTAGAAGACTTTGTTTCCGGGCTTTTGCTTCCTCTCTTTTATGCCATTAGTGGGCTTAAGACTGATATCAGCTTGATCAGTGGGGCTAGTACATGGACTTTTGTACTCGTGGTGATTCCTCTCGCTTGTTTAGGCAAGATTGTTGGGACTATGCTTATTACACTCATTTTCCAGATACCAAACCGTGATGGGGTTGTTCTTGGTTTACTCATGAACACTAAAGGTCTTGTTGAAATGATTGTGCTCAATGTTGGGAGGGAACAAAAGGCCTTgggtaataaaatattctcaGTTATGGTCATTGTAACACTCATAATGACAGCAATCGTTTCACCCATtgtaacattaatttataaGCCAAGAAAAATGCTGGTACCTTATAAAAGGAGAACAATACAGAATTCAAGATTTGATTCAGAGTTACGGGTGCTGGTGTGTATTCACACCCCTAGAAACGTCCCCACAATAATCAATCTCCTTGAAGCAACTCACCCCCACAAAAGTTCTCCCATATGTGCTTATGTGCTCCACTTGGTTGAACTCACTCGTAGAGCTTCTGCCATGCTCATTGTTCATGCTAACAGACAATCAGGAGGCCCTGCCCTCAACAAAACACAAGCACAAAGTGACCACATCATCACTGCATTTCAGAACTTTGAGGAACACGTTGGTCATGTCCAAGTCCAACCCTTAACAGCTATTTCCCCCTATTCTACCATGCATGAAGACATATGCAATTTGGCCGAGGACAAAAGGGTGTCCATCATCATCATTCCTTTCCATAAGCAACAAACAGTTGATGGAGAAATGGAAGACACAATTCCAGCATTCAGAATGGTGAACCACAATCTATTACAGAATTCACCTTGCTCACTTGGCATACTTGTGGATAGAGGCCTTAACGGATCCAACCGCTTGATTGGAAACCAAGCATCTCATCAGGTGGCTGTGTTATATTTTGGAGGACCAGATGATAGAGAGGCATTAGCTTATGGATGGAGAATGTCAAGGCATCCAAGGGTTCGCCTCACTGTCATGCATTTCATTCCAAGCAACGATGCAACTCAAACTCCGCATACAGATCTGTTACGGACTAAGATTGATCAAAGTTTCACCAGTATAAAGAATGGGGGGGAGAACAAACTGGATGAGGATTATATAAATGAGTTCAAGAGGGTGAGTACAAATGATAATTCAGTTGTTTACACAGAAAAGTTTGTGAATAATGGGGAGGAAACGGTTGCAGCAATAAGATCAATGAACCATGTCAATGACTTGTTCATAGTTGGGAGGGGCCAAGGGACAACGTCGCCACTAACAGATGGCCTAACAGATTGGAGTGAGTGTCCGGAGTTGGGAGCCATTGGGGATTTGCTGGCTTCTTCAGACTTTGAGACAACAGCTTCAGTTTTGGTGATGCATCAACATGTTGGGCAAGGGCCAGATGGGGACGAAATTTTTGTGACTGAAAGACCATGGCAAACAAGTGAAACCTACCACAACatgaaacaacaacaacaacatatgcaaAGATATAGAATGCCAGTGGGAATGGGACACTCTCTTTTGTAA 2508 0.4195 MAPFNMSDRSIICYTPSMTTTNGLWQGDNPLDYSLPLFVLQLTLVVCATRFFVFILKPFHQPRVIAEILGGLLLGPSGLGRNKKFANAVFPLKSEMVMETMANMGLIYFLFLVGLEMDILIIKRTGKKIVSIALAGMILPFMVGVCVSSLIDDKDKNINQSGYVLYLGIVLSVTAFPVLARTLAELKLISTELGKLALSTSLVNDVCAWMLLALAIALSKQNTSNWASVWVVLSNLAFVSFCLLVVRPAVSWLIKRTPEGKPFSEFQICIVLIGVMISAFITDVLGTHSVFGAFVYGLVIPNGPLGAAIIEKLEDFVSGLLLPLFYAISGLKTDISLISGASTWTFVLVVIPLACLGKIVGTMLITLIFQIPNRDGVVLGLLMNTKGLVEMIVLNVGREQKALGNKIFSVMVIVTLIMTAIVSPIVTLIYKPRKMLVPYKRRTIQNSRFDSELRVLVCIHTPRNVPTIINLLEATHPHKSSPICAYVLHLVELTRRASAMLIVHANRQSGGPALNKTQAQSDHIITAFQNFEEHVGHVQVQPLTAISPYSTMHEDICNLAEDKRVSIIIIPFHKQQTVDGEMEDTIPAFRMVNHNLLQNSPCSLGILVDRGLNGSNRLIGNQASHQVAVLYFGGPDDREALAYGWRMSRHPRVRLTVMHFIPSNDATQTPHTDLLRTKIDQSFTSIKNGGENKLDEDYINEFKRVSTNDNSVVYTEKFVNNGEETVAAIRSMNHVNDLFIVGRGQGTTSPLTDGLTDWSECPELGAIGDLLASSDFETTASVLVMHQHVGQGPDGDEIFVTERPWQTSETYHNMKQQQQHMQRYRMPVGMGHSLL 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0338 835 PANTHER CATION/H+ EXCHANGER 3 8 821 - -
Ssu1g0338 835 Gene3D - 37 435 IPR038770 -
Ssu1g0338 835 Pfam Sodium/hydrogen exchanger family 45 426 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Ssu1g0338 835 PANTHER CATION/H + ANTIPORTER 8 821 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0338 Ssu-Chr1 8043493 8046519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0338 7 810 Antiporter Super Family AT2G13620 64.801 0.0 1055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0338 - - gmx:100800514 1438.71