Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0334 ATGAAGAAGTGCGAGCTCTGTAACAGTCCCGCAAAGTTGTTCTGTGAATCAGATCAAGCCAGCCTCTGTTGGGAATGCGATGCGAAGGTTCACAGTGCAAACTTCCTCGTCCCCAAACATCCCAGGATTCTTCTCTGCCATGTTTGTCAATCACTAACACCGTGGCACGGCACAGGACCCAAGTTTGTACCCACCATCTCCGTTTGCAACACTTGTGTTAACAACAATAGAGCGACCTGTAGCCAACAGAatcatgatgatgatgttgacgACAACGACGACGACGATGGCACGGAGGAGGATCATATAGAAAACGATGATGGTGGTGTGGCCgaagatgatgaagaaaatCAAGTGGTTCCATGGACATCTACATCACCACCCCCAGCTTCCACTTCTTCAAATAGTGTTGCAACTAGTTCTACCAGGTTCTCTGATGTTGAAGAAGGTGGCTCAGCCTCAGATTAA 468 0.4487 MKKCELCNSPAKLFCESDQASLCWECDAKVHSANFLVPKHPRILLCHVCQSLTPWHGTGPKFVPTISVCNTCVNNNRATCSQQNHDDDVDDNDDDDGTEEDHIENDDGGVAEDDEENQVVPWTSTSPPPASTSSNSVATSSTRFSDVEEGGSASD 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0334 155 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 144 - -
Ssu1g0334 155 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Ssu1g0334 155 MobiDBLite consensus disorder prediction 118 155 - -
Ssu1g0334 155 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Ssu1g0334 155 Gene3D Classic Zinc Finger 1 38 - -
Ssu1g0334 155 MobiDBLite consensus disorder prediction 78 155 - -
Ssu1g0334 155 CDD Bbox1_BBX-like 3 45 - -
Ssu1g0334 155 PANTHER B-BOX TYPE ZINC FINGER PROTEIN 1 144 - -
Ssu1g0334 155 SMART bboxneu5 1 45 IPR000315 GO:0008270
Ssu1g0334 155 MobiDBLite consensus disorder prediction 87 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0334 Ssu-Chr1 8003063 8003530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0334 2 108 C2C2-CO-like Transcription Factor Family AT4G27310 51.818 6.84e-35 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu1g0334 zf-B_box 5.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0334 - - gmx:100805832 254.218