Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0331 ATGCTCCAGAAGTGTTTTTATGGATTAATGGGACTCGCCCTTATTGGAGAACTGGTCCATGGAATGGTAGGATCTTCATTGGGACACCAGCTGATGTCAACTGGGTATTTGTATGGATGGAGTGTTGGATATGAAGGGAATGAAACTGTTTACCTAACTTATAGTTTCGCTGATCCATCTGCGTTCGGAATCCTTACCTTGACTCCACAAGGGAAGATTAAATTAGTAAGGTATTATAACAGAAAGCAAGTGTTGACTATGGATTTGGGAATTTCTGGTTGTGATGTTTATGGCACGTGTGGAGCATTTGGAAGCTGTAATTCCGAGAGTTCACCAATGTGTAGTTGTTTGAGTGGGTATGAGCCCGGGAATCCGGAGGAGTGGAGTAGGCAAAATTGGACTAGTGGGTGTGTGAGAAAGGTGCCACTCAAGTGTGAGAGGTTGAAAAATGGGAGCGAAGCTGGGCAAGAAGATGaatttttgaaacttgaaaCGATGAAAGTTCCAGATTTTGCGGTGAGGTTGGATGTTGAGGAAGGCCAATGCGGAACACAATGCTTACAGAATTGCTCTTGTTTGGCGTATGCATATGATGCTGGCATTGGATGCTTGTATTGGACTGGAGACTTAATTGACTTACAAAAATTCCAAACTGCAGGAGTTGATCTCTACATCCGTCTCGCCCATTCAGAATTTCAATCCAGTAATGCACAAGGGCATACTAATAAAAGAAGAGGCAAGAGATTAATCATTGGAATTACAATGGCAACTGCTGGAATAATTATCTTGGTCATCTGTGCATATCTGGCCATTCGTACATTTCACTCGCGGAAGGGAACTGCTAAACATTCGGAAAATCAGAGCCAAAGAGTGACTGAGGTCCAGAAACCAGTTAAACTGGATGAGCTACCGCTATTTGATTTTGAAGTCGTTGCCAATGCTACAAACGACTTTCACTTAGCCAATACGCTTGGAAAGGGAGGTTTTGGTCCTGTGTACAAGGGATTATTGCCAGATGGTCAGGAAATTGCAGTGAAAAGACTCTCCAGAGCATCTGGACAAGGTCTAGAAGAATTTATGAATGAAGTGGTGGTGATTTCTAAGCTTCAACATCGCAATCTTGTAAAACTTCTTGGCTGCTGTATTGAAGGAGACGAAAAGATGCTCATCTATGAGTTCATGCCAAATAAAAGTCTGGACGCATTCATTTTTGatCCACTCCGGCGGAAACTTCTAGACTGGACAAAAcgttttaatataattgaaggAGTTGCTCGGGGCTTACTCTATCTTCATAGAGATtctagattaaaaattatacatagaGATTTGAAGGCAAGCAATATCTTGCTAGATGCAGAGATGAATCCAAAAATATCAGACTTTGGTTTGGCTAGAATATATAAAGGCGAGGATGAGGTTAATACCAAAAGGGTTGTTGGCACATATGGCTACATGTCCCCTGAATATGCAATGGAAGGATTATTTTCTGAGAAATCAGATGTCTACAGCTTTGGTGTTTTGTTACTGGAGATTATTAGTGGAAAAAGAAACACTAGCTTTCGTAATGATGACCAGTCTCTCAGCCTCATAGGATATGCATGGAATCTATGGAAAGAAGACAATATTAGGTTTTTGGTTGATCCAGAGATATCAGATTCAGGATCTGAGAATCATATTTTGAGGGGCATCCACATAGCATTTCTATGCGTGCAAGAAGTTGCAAAAACAAGACCAACTATGACTACTGTGCTCTCGATGCTTAATAGTGAGATTTCCCATCTCCCTCCTCCTAGGCAAGTTGCATTTGTTCAGAAGCAAAATTCATCAAGTTTAGAGTCATCTTCTCAGGAAAATCAGTGCAACTCCAACAACAATGTAACTCTTACTGAGATCCAAGGCAGATAA 1908 0.403 MLQKCFYGLMGLALIGELVHGMVGSSLGHQLMSTGYLYGWSVGYEGNETVYLTYSFADPSAFGILTLTPQGKIKLVRYYNRKQVLTMDLGISGCDVYGTCGAFGSCNSESSPMCSCLSGYEPGNPEEWSRQNWTSGCVRKVPLKCERLKNGSEAGQEDEFLKLETMKVPDFAVRLDVEEGQCGTQCLQNCSCLAYAYDAGIGCLYWTGDLIDLQKFQTAGVDLYIRLAHSEFQSSNAQGHTNKRRGKRLIIGITMATAGIIILVICAYLAIRTFHSRKGTAKHSENQSQRVTEVQKPVKLDELPLFDFEVVANATNDFHLANTLGKGGFGPVYKGLLPDGQEIAVKRLSRASGQGLEEFMNEVVVISKLQHRNLVKLLGCCIEGDEKMLIYEFMPNKSLDAFIFDPLRRKLLDWTKRFNIIEGVARGLLYLHRDSRLKIIHRDLKASNILLDAEMNPKISDFGLARIYKGEDEVNTKRVVGTYGYMSPEYAMEGLFSEKSDVYSFGVLLLEIISGKRNTSFRNDDQSLSLIGYAWNLWKEDNIRFLVDPEISDSGSENHILRGIHIAFLCVQEVAKTRPTMTTVLSMLNSEISHLPPPRQVAFVQKQNSSSLESSSQENQCNSNNNVTLTEIQGR 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0331 635 MobiDBLite consensus disorder prediction 607 635 - -
Ssu1g0331 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Ssu1g0331 635 Pfam S-locus glycoprotein domain 41 122 IPR000858 GO:0048544
Ssu1g0331 635 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 30 634 - -
Ssu1g0331 635 ProSiteProfiles PAN/Apple domain profile. 145 228 IPR003609 -
Ssu1g0331 635 SMART ntp_6 155 227 IPR003609 -
Ssu1g0331 635 Pfam PAN-like domain 155 213 IPR003609 -
Ssu1g0331 635 Gene3D Phosphorylase Kinase; domain 1 275 393 - -
Ssu1g0331 635 ProSiteProfiles Protein kinase domain profile. 318 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0331 635 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 30 634 - -
Ssu1g0331 635 SUPERFAMILY Protein kinase-like (PK-like) 303 619 IPR011009 -
Ssu1g0331 635 Pfam Protein tyrosine and serine/threonine kinase 319 534 IPR001245 GO:0004672|GO:0006468
Ssu1g0331 635 SMART serkin_6 318 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0331 635 Gene3D Transferase(Phosphotransferase) domain 1 394 598 - -
Ssu1g0331 635 CDD STKc_IRAK 324 589 - -
Ssu1g0331 635 CDD PAN_AP_plant 141 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0331 Ssu-Chr1 7828857 7831812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0331 188 635 Receptor kinase-like Gene Family AT4G21410 45.263 1.92e-124 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu1g0331 PK_Tyr_Ser-Thr 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0331 - - gmx:112998788 1110.9