Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0328 ATGAACCAGTGTTCTTGCGCTCAGCGTGAGTTATCCAAGCTCAGTGTGAAACTGAATCTGTGTGCTCACGCTGAGAGTGCCCGCATTCTGCTGGGTTCTATTTTTGGGCCTGATGagcaaaaaataaaggaaaagcgGTCtagaattagtttaaaaaaaaggaaagAACCATGCGCCTTTAGAGTATCACAACCCGTCGCAACACCAATCGAAATTTGGGCAAAATGGTTCCAAGGACGAAAAACCATCGGAGAACGGCCAGGGCGTCATTTCAAAGCTCTTGCTCTCCAAAAACAGATTGATGCGTTGCGGCACCAGCACCGACAAGGATCAATCCGGCGGCAAGGAGACTACGAGCAAGCCCTTGCTCTCTTTGTGGTCTTACTGGCGGAAGTAATCGGAGCTTGGGAGAGTTGGAGGATAGAAATTCTCCCAATTCCAAATGCTAGAGGATTAAGAAAAAAAAGGGTATTGGATGCTGAGGAGCAGATGGGAAAGACTCATGTATGTGCTTGTGAACTAAAACAGGATTGCATGGATGAGTACAATCTGTTAGAAGTATTTCCTGAACCAAATAATTTTGCTCTTGTTAGAAGAAAATATCAAGCCataggagaagagaagaaatggATTCAAAATGAGACTATTGTCAGCCTAACTTTTACTGATTTACATGGATTGACTAAAGTTGCTGTAGAGGAACAGTTTGAGACTATTGTTCAAGACATTGAAAATATGATTCGATCTTATGTTGAGAAGgtaattatgtttttatcaaaGTCCGATGAAGAAATCAGCGTAAATAGGAAACTAGCGAAGGAGCTGGTTGATAAGTGGTAA 840 0.3905 MNQCSCAQRELSKLSVKLNLCAHAESARILLGSIFGPDEQKIKEKRSRISLKKRKEPCAFRVSQPVATPIEIWAKWFQGRKTIGERPGRHFKALALQKQIDALRHQHRQGSIRRQGDYEQALALFVVLLAEVIGAWESWRIEILPIPNARGLRKKRVLDAEEQMGKTHVCACELKQDCMDEYNLLEVFPEPNNFALVRRKYQAIGEEKKWIQNETIVSLTFTDLHGLTKVAVEEQFETIVQDIENMIRSYVEKVIMFLSKSDEEISVNRKLAKELVDKW 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0328 279 Pfam TFIIS helical bundle-like domain 235 279 IPR017923 -
Ssu1g0328 279 Gene3D - 210 278 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0328 Ssu-Chr1 7775987 7792747 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Ssu1g0328 Med26 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0328 - - csin:114262833 66.6254