Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0322 ATGCAGGAGTTCAAGAATGAGGTTATTTTGATCTCCCAACTTCAGCATCGAAACCTTGTCAAGCTTCTGGGTTGTTGCATTCATGGAGAAGATAAAATGTTGGTCTATGAATACATGCCAAACAGAAGCTTGGACTCCTTATTATTTGATGAAACCAGGCGCTCTGTGCTCAGTTGGCAAAAGAGGCTGGACATAATTATTGGCATTGCTCGAGGACTTCTCTACCTTCACAGAGATTCAAGACTGAGAATAATCCATAGGGACCTGAAAGCAAGCAATGTTCTTTTAGATGGTGAAATGAACCCAAAAATTTCTGACTTTGGAATGGCAAGAATGTTTGGTGGAGATCAAACTGAAGCAAAGACCAAGAGAGTAGTGGGAACCTATGGATATATGCCCCCAGAGTATGCAATAGATGGACACTTCTCTTTCAAATCGGATGTTTATAGCTTTGGAGTTTTACTCTTAGAGATATTGAGCGGCAAGAAAAACAGAGGATTTTTTCACCCAGATCACAAACTGAATCTCCTAGGCCATGCATGGAAGCTATGGAATGAAGATAGGGCCTTGGAGCTGATGGATCCGTTGCTTGAGAATCAGTTTCCCACATCTGAAGTTCTAAGGTGTGTTCAAGTGGGTCTGTCATGCGTTCAACAGCACCCAGAAGATAGGCCAACAATGTCATCGGTGCTTTTGATGTTGAACAGTGAGGGTGTGTTGGTCCCCCAACCTGGAAGGCCAGGATTATATTCCGAGAGATGTTTCTCTGAGACAAATTCATCATCACGTTGTGGACTGAACTCTGGTTCCAATGACATAACTGATACTTTACTAGAGGGTCGTTGA 846 0.4279 MQEFKNEVILISQLQHRNLVKLLGCCIHGEDKMLVYEYMPNRSLDSLLFDETRRSVLSWQKRLDIIIGIARGLLYLHRDSRLRIIHRDLKASNVLLDGEMNPKISDFGMARMFGGDQTEAKTKRVVGTYGYMPPEYAIDGHFSFKSDVYSFGVLLLEILSGKKNRGFFHPDHKLNLLGHAWKLWNEDRALELMDPLLENQFPTSEVLRCVQVGLSCVQQHPEDRPTMSSVLLMLNSEGVLVPQPGRPGLYSERCFSETNSSSRCGLNSGSNDITDTLLEGR 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0322 281 Pfam Protein tyrosine and serine/threonine kinase 2 231 IPR001245 GO:0004672|GO:0006468
Ssu1g0322 281 ProSitePatterns Serine/Threonine protein kinases active-site signature. 84 96 IPR008271 GO:0004672|GO:0006468
Ssu1g0322 281 SUPERFAMILY Protein kinase-like (PK-like) 3 242 IPR011009 -
Ssu1g0322 281 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 1 279 - -
Ssu1g0322 281 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 279 - -
Ssu1g0322 281 Gene3D Phosphorylase Kinase; domain 1 1 38 - -
Ssu1g0322 281 SMART serkin_6 2 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0322 281 ProSiteProfiles Protein kinase domain profile. 1 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0322 281 Gene3D Transferase(Phosphotransferase) domain 1 39 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0322 Ssu-Chr1 7602793 7603994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0322 2 249 Receptor kinase-like Gene Family AT4G05200 60.887 1.64e-110 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu1g0322 PK_Tyr_Ser-Thr 6.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0322 - - gmx:100804024 536.184