Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0321 ATGGCGGCTCAGCTTCCGGAGCACTTCAAGTGTCCCATTTCCCTGGAAATAATGTCCGACCCGGTCATCCTCTCGTCCGGCCACACCTTCGACCGCTCCTCCATCCAACGGTGGCTCGACGCCGGCCACCGCACGTGCCCAATTACGAAACTGCCCCTCCCCGAGCACGCTTCCCTCATCCCCAACCACGCCCTCCGAAGCCTAATCTCCAACTACGCCCCCATCTCCCCTCTCCACCACAGCCCACACCCACAAACCCTAATCTCCGCCCTCACCTCTCCCTCCTCCCCTCTACCCTCCAAGCTCGACGCGCTCCGCCTCCTCACGCGCCTCTCCCGCGGCGACTCCCTCTTCCGGCGCCGCCTCGCCGACTCCCCCGCCCTCGTCCCCGCCCTCCTCGCCTGCGTCGACGACGACGCCGCCCTCCGCCACCGCGCCCTCTCCCTCCTCCTCAACCTCTCCCTCGACGACGACGCCAAGGTTGGCCTCGTCGCCGAGGGCGTCCTCGCCCGCCTCGTCGCCTTCCTCGCCGCCGCGCCCCCCTCCGACTGCCGCGCCGTCGCCGCCACGCTCCTCACCAGCCTCGCCGTCCTCGACGTCAACAAGGCCACCATCGGAGCCTTCCCGCGCGCCATCCACGCGCTCGTGTCGCTCGTCCGCGACGGCAAGGGGAGAGAGAGGAAAGAGGCGGCCACCGCGCTTTTCGCCGTGTGTTCCTTCCCGGACAACCGGAGAAGGGCGGTGGAGTGCGGCGCCGTTCCCGTTCTGCTCCGGAGCGCCGATTCGGGGCTGGAGAGGAGCGTCGAGGTTATTGGGGTTTTGGCGAAGTGTAAGGAGGGGAGGGAGCAGGTGGAGCGGTTTCGCGGGTGCGTGCAGATTCTGGCGCGCGTGTTGAGGAATGGAAGCCCCAGGGGGGTTCAGTATGCTCTTATGGCTCTTTATTCTCTCTGCTCTCACAGTGAGGGAAGTGCTCTCGAGGCCTTAAGAGATGGGGTTTGGAAATTTGTCAAGGGCTGGTGCACGATGATAATGCCAAGGTGA 1041 0.6599 MAAQLPEHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLPEHASLIPNHALRSLISNYAPISPLHHSPHPQTLISALTSPSSPLPSKLDALRLLTRLSRGDSLFRRRLADSPALVPALLACVDDDAALRHRALSLLLNLSLDDDAKVGLVAEGVLARLVAFLAAAPPSDCRAVAATLLTSLAVLDVNKATIGAFPRAIHALVSLVRDGKGRERKEAATALFAVCSFPDNRRRAVECGAVPVLLRSADSGLERSVEVIGVLAKCKEGREQVERFRGCVQILARVLRNGSPRGVQYALMALYSLCSHSEGSALEALRDGVWKFVKGWCTMIMPR 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0321 346 Gene3D - 84 341 IPR011989 -
Ssu1g0321 346 SMART arm_5 277 318 IPR000225 GO:0005515
Ssu1g0321 346 SMART arm_5 156 197 IPR000225 GO:0005515
Ssu1g0321 346 SMART arm_5 115 155 IPR000225 GO:0005515
Ssu1g0321 346 SUPERFAMILY ARM repeat 65 328 IPR016024 -
Ssu1g0321 346 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Ssu1g0321 346 PANTHER U BOX DOMAIN-CONTAINING 2 338 - -
Ssu1g0321 346 SUPERFAMILY RING/U-box 3 72 - -
Ssu1g0321 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 74 IPR013083 -
Ssu1g0321 346 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Ssu1g0321 346 CDD RING-Ubox_PUB 9 50 IPR045210 -
Ssu1g0321 346 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Ssu1g0321 346 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0321 Ssu-Chr1 7581907 7582947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0321 1 339 U-box Gene Family AT4G21350 57.429 2.55e-126 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0321 - - gmx:100796272 479.559