Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0319 ATGGCTGAGGAGTTTCAAGCTGCTATTTGTGGTGAAAGTTGGTGGAATATTAATCCAACAAGAAGTGTGTTCCCTCTGATGTCATCAACTTGCTCTGTGGCAGCAGCTGATGCAGGAAACTACAGCACTTGGCAAACTGATTTCGTGGATTTGAAGGGAACAACAAGGTCTTGTGCTGAGGAGACTAATAACTTGGTTTCTTCTGATACTTCTCTGAGTTTTCTAGATGCTGAGAAGCCACAGCAGAGTGACTCAGCTAGTGGAACTGGTAGCATCTTGATCGATTCCACCTTACAAATGATGGGTTTTGGCATGTCATCTTCAACTTCATCGAATTGGAATCAATCTCTATTAGGGACCGGTTTTCATTCTGTGCTTCAAGAAGAAACAGCTTCACAGATCCAAAAGGATTGGAGTCCAAAGAATTTCTCATCTGCCGGTGGTAGCCAAGTTTCCACCATTGATGCTTTCAAGCCAATGAACCAAGAGTTTTCCTTGGATCAGCAGAGTCTGAATTCTGTTGTTACCAGCACTGGATCATTATCTGGTGGCTTCCCAATTGTTTCAGCTTCCTATGGTTACCCTTCAACGTTGATACAAAGCTTATATGACCCTGAGCCTCAAGCACAACCACAGAACTCACTTTTCACCAACCCCTCCATGTCCTATGCATCTACCGCAAACTATGGGACATGTTCCAATGAACTGTCACCAACATGGTCCAAAGTTTCTTCCCTTCTGAAACCCTCAATGCCAAAACAGCAGCCTAGTGGATTGCACTTTTCCAACAATACTACTTTCTGGAATGCTTCGACCGAAGCACTTAATGACATAAGAGCAGGTGTTTTTGCTTCATCGCAAGGACAATATCAAACGccaaaatttgaagagaaagCCAACTGCCCCAATACCCTATTAAACaagCTCAAGAGAGAAGAATCTCCAGACGCAGCATCAGCAGCGAAGAAAAATTCTTCTGAGCCTGCATTCAAGAGGCAAAGAATTGAGACTCCATCCCCATTACCAACTTTTAAGGTTAGGAAAGAAAAGCTGGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAaagACGGACACAGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGACCAAGTCAGTGTGTTGAGCAGTCCATATATGAAAAATGGAGCTCCAATTCAACACCAGCAGGATTGTGATAATCTGAAAGACTCAGAAGGGCCAAAACAAGATTTAAGAAGCCGAGGGCTGTGTTTGGTACCCATTTCAAGCACATTCCCGGTGGCTAATGAGACCACTGTTGATTTCTGGACGCCTACATTCGGAGGCGCACTCATTGGCAGGTAG 1374 0.4389 MAEEFQAAICGESWWNINPTRSVFPLMSSTCSVAAADAGNYSTWQTDFVDLKGTTRSCAEETNNLVSSDTSLSFLDAEKPQQSDSASGTGSILIDSTLQMMGFGMSSSTSSNWNQSLLGTGFHSVLQEETASQIQKDWSPKNFSSAGGSQVSTIDAFKPMNQEFSLDQQSLNSVVTSTGSLSGGFPIVSASYGYPSTLIQSLYDPEPQAQPQNSLFTNPSMSYASTANYGTCSNELSPTWSKVSSLLKPSMPKQQPSGLHFSNNTTFWNASTEALNDIRAGVFASSQGQYQTPKFEEKANCPNTLLNKLKREESPDAASAAKKNSSEPAFKRQRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVSVLSSPYMKNGAPIQHQQDCDNLKDSEGPKQDLRSRGLCLVPISSTFPVANETTVDFWTPTFGGALIGR 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0319 457 Gene3D - 345 407 IPR036638 GO:0046983
Ssu1g0319 457 MobiDBLite consensus disorder prediction 312 339 - -
Ssu1g0319 457 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 402 IPR036638 GO:0046983
Ssu1g0319 457 CDD bHLH_AtbHLH_like 341 392 IPR045239 -
Ssu1g0319 457 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 47 445 - -
Ssu1g0319 457 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 335 384 IPR011598 GO:0046983
Ssu1g0319 457 PANTHER TRANSCRIPTION FACTOR BHLH123 47 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0319 Ssu-Chr1 7542949 7545351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0319 1 452 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 39.323 5.30e-71 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0319 - - gmx:100794682 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1802 5 53901242 53904201 Ssu1g0319 1 7542949 7545351 PCT