Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0315 atggAGTATGAAGATGATGATTGGCTATGTGTTACTATGGAAGAGTTTTCTCTTGCTACTGAAAATGGTAGTAGCAGGCAAAGGATGAGTAGGAAGAGGAACTATGATGATGACACAAGAGAGTACAAATCAAAGAACCTGGAGACTGAAAGGAGGAGGAGGGAGAAGCTCAGTAGCAGGCTTTTGATGCTGCGGTCTCTAGTACCAATCATCACAAATATGAATAAAGcaacaattattgaagatgCTATCACCTACGTTGAGAAGCTGCAAGACAAAGTCCGGAGTCTCACCCAAGAGCTTCACCAAATGGAAGCAACTTCAGAGGAAACAGCAGAGACAAAAACAGATGAAATTGATGCTGCGGAAGATATGAAGAATTGGGGTATACAGGCAGAGGTCAGAGTGGCACAAATAGATGGAAATAAACTCTGGGTCAAGATCATCATTGAGAAGAAGAGGGGAAGATTCAGCAAATTGATGGAGGCCCTGAATAACGTTGGCATTGAGCTCATAGACACCAATATCACAACCGCAAAAGGAGCATTTCTGATTACATGCTGCATACAGGGTAAGGATGGTGAAAGACTTGCAATTCATCAAACCAAGAATTTGTTGCAAGAAATTATCAATGACATATAG 642 0.4034 MEYEDDDWLCVTMEEFSLATENGSSRQRMSRKRNYDDDTREYKSKNLETERRRREKLSSRLLMLRSLVPIITNMNKATIIEDAITYVEKLQDKVRSLTQELHQMEATSEETAETKTDEIDAAEDMKNWGIQAEVRVAQIDGNKLWVKIIIEKKRGRFSKLMEALNNVGIELIDTNITTAKGAFLITCCIQGKDGERLAIHQTKNLLQEIINDI 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0315 213 Gene3D - 30 107 IPR036638 GO:0046983
Ssu1g0315 213 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 9 213 - -
Ssu1g0315 213 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 107 IPR036638 GO:0046983
Ssu1g0315 213 MobiDBLite consensus disorder prediction 21 51 - -
Ssu1g0315 213 SMART finulus 47 96 IPR011598 GO:0046983
Ssu1g0315 213 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 41 90 IPR011598 GO:0046983
Ssu1g0315 213 PANTHER TRANSCRIPTION FACTOR DYT1 9 213 - -
Ssu1g0315 213 Pfam Helix-loop-helix DNA-binding domain 44 91 IPR011598 GO:0046983
Ssu1g0315 213 Coils Coil 80 114 - -
Ssu1g0315 213 MobiDBLite consensus disorder prediction 26 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0315 Ssu-Chr1 7477158 7478249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0315 28 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 44.330 3.57e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu1g0315 HLH 3.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0315 - - gmx:100793637 318.931