Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0308 ATGCTTGAGGTTTGGCTTTCTCTCAAGAAGACACTTCAGTGCAAACCACACCCAAATCAAGTTCATGATCCAAGGACAATTAGGCAGCAAAAAGGTAATCAGCGAAAAAAGTCAGGTAATCTTGAGAGTTCAAATACCAAAGATTTCATCCAAGGAAGTAAGAGGCACTCAAAAAATCCACTAAGTTTCAAGGGGGACATTGACATCACTAGTCCCATAACCCATGAAATTGTTCTTGACACCTCAAACAATGAAATTGGTCGATGTTGTCCTTGTCCTCGAAGCAATAGCAGCAGTAAACGTTCGGAAGGTTCTCATAGAACACGAAGGTCAGCTACATCTTCAAAGATAACATATCCGGTTGATTACAATGACGCAAATGTCTCCTCCAACACAAGGACGTTGGTTCAGATGGATTCTGATGGTTGTTCAACATTGACATGTCATAAATGTGGcgagaaattaaaaaatcttgatgCTGTAGAAGCACACCATATCTCCGAGCATTCAGTCACTGAACTTGAAGAGGATTCATCTAGACAGATTATAGAAACAATATGTGGAACAAGCTCGATTAATTCTGAAATCATGTTGGGGCAGATTGATTGTATCTTAAAGGTTCTGAACGTACCAAAAACCTTTGCTTGCTTTGAGGAATATAGAGAAATGGTGAAGGACAAGGCTGACAAGCTAAAGAAGAAGCACCCGCGTTGCGTGGCTGATGGAAATGAGCTTTTAAGGTTTCATGGCACAACTATTGCATGTTCTCTTGGCATGAACAGTTCATATAGCCTGTGCACTTTAGAATATTGTGGTATGTGTCAAATTCTGAGACATGGCTTCTCCGCCAACAAGGAATTCCAAGGTACATTGGGGGTTTACACCACTTCCACAAGTGGGAAAGCCTTTGATTCCATTTCCATTATGACATCCCATGAGAGACCATTTCCAAGAAAATCTGTCATAGTGTGCAGAGTAATAGCCGGGAGAATTTATAGTCCTCTTGAGGAAATTGAAGAAAAGGTTGATTCAGAGTTTGATTCATTGgcagaaaaaataaatggtcATTCAGATGTTGAGGAACTCTACGTGTTAAATCCCAAAGCCCTGCTCCCTTGCTTTGTGGTAATCTACAAACAGCAAACAGCGAAGGTTAGAAGGTTCAACTCAAGCTTAAGGATAAGTAGCTTTTAG 1194 0.3945 MLEVWLSLKKTLQCKPHPNQVHDPRTIRQQKGNQRKKSGNLESSNTKDFIQGSKRHSKNPLSFKGDIDITSPITHEIVLDTSNNEIGRCCPCPRSNSSSKRSEGSHRTRRSATSSKITYPVDYNDANVSSNTRTLVQMDSDGCSTLTCHKCGEKLKNLDAVEAHHISEHSVTELEEDSSRQIIETICGTSSINSEIMLGQIDCILKVLNVPKTFACFEEYREMVKDKADKLKKKHPRCVADGNELLRFHGTTIACSLGMNSSYSLCTLEYCGMCQILRHGFSANKEFQGTLGVYTTSTSGKAFDSISIMTSHERPFPRKSVIVCRVIAGRIYSPLEEIEEKVDSEFDSLAEKINGHSDVEELYVLNPKALLPCFVVIYKQQTAKVRRFNSSLRISSF 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0308 397 Gene3D - 162 384 - -
Ssu1g0308 397 ProSitePatterns Zinc finger C2H2 type domain signature. 148 169 IPR013087 -
Ssu1g0308 397 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 380 - -
Ssu1g0308 397 MobiDBLite consensus disorder prediction 93 116 - -
Ssu1g0308 397 MobiDBLite consensus disorder prediction 15 66 - -
Ssu1g0308 397 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 380 - -
Ssu1g0308 397 SUPERFAMILY ADP-ribosylation 236 383 - -
Ssu1g0308 397 MobiDBLite consensus disorder prediction 31 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0308 Ssu-Chr1 7227462 7229329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0308 4 379 C2H2 Transcription Factor Family AT5G54630 43.207 3.06e-105 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu1g0308 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0308 - - gmx:100792577 633.254