Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0305 ATGGCACAGAAACAGAAGCTGCGCCCCTCCCCTCTGGACGAGCCACCAACCGCTTCCTCTTCGTCTTCCGAGGAAGAAGACCAACAACCATCCTCTCAACAGCACGAAGAAGATGCAGTTTCCTCcggagaagaagaggaagaagaagaagcttcCTCCCAAGAAGACGacggagaagaagaagaagatctCCCACCCGCCCCCAAAAACACTCCACCCCCACCCCCTCCCACAAACCCTCATCCCCAACCCTCATCCTCGGAATCCGACACCGAAACCGGATCCGAAACCGAATCCGAACCCGACCCCATTCCCGCCAAAGTAAAACCCCTCGCCTCCAAGCCCATGGACCAGGCCCAAAAGCCCAAGCCCCAGCCCTCCCCGGCGCCCCCCAAATCCGGACCAAAGCGCCCCGCCGAGAACAACGCCCACGTCACCGACCCCAAGCGCGCCAAGAAGAAATCCACCaattcttcttcctccttcgCCGCCGCCGCCGCTTCCGACGACGAGACGGAGGAGGACGGGAAGAAGTCCGGCGATAACTCGAAGAAGCCTCAGAGACTCTGGAGCGAGGAGGACGAACTCGCCATACTCAAAGGCGTGGTCGAGTTCAGTTCAAAAACCGGGCAGGACCCTCTCAAGTTTGCGAACGCAAACGCTTTCCACGATTTCATGAAGAGGTCGCTTCACGTGGAAGTTTCCAGCAACCAGCTGAAGGAGAAGGTGAGAAGGTTGAAGAAGAAGTTCGAGACCAATGCAGGGAAAGGGAAGAACGGGGAGGGACCCACCTTCTCCAAGCCGCACGACCAGAAAGCGTTTGAATTGTCGAAAAAGGTTTGGGGAAGTGAACAAGGTGGAGGCGCCAATGGGCCGGTGGAAAAGCCCAAGTCCAATGGGAATGCTGCCAAGAGTCCGAAGAAGAAGGAAACCGGTAGCAGGAATGTGGCTTCTGCTAAGAAATTGAAACCCGAAACCAAACTGGAACTGGCGCCGGTGCCGGTACCGGCGGATTCCTTGGCGTTGAAGGAATCTGGAATGATGGACATTGATCAAAAGCCGGGTAGTGGTTGTGGAAGTTCGCTTTGGCGCGAAATTTCTCGTCGTAGAGAGGGTGTTGAGTTGGATGAGGATGAGCTGAAGAGGGGGTTGGAGTTGATTGGAGAATCAAAGAGGGCAGAATTGGAGGGGAAGTGGAAGAAAATACGATTGGCTGAGATAGAATTGGTTGCTAATCGCTCATTGCTGATTGGGGAGCAGACTAAGTTGATAGCTGAGGCGCTTCAGTCATCCGGCCATTAG 1302 0.5269 MAQKQKLRPSPLDEPPTASSSSSEEEDQQPSSQQHEEDAVSSGEEEEEEEASSQEDDGEEEEDLPPAPKNTPPPPPPTNPHPQPSSSESDTETGSETESEPDPIPAKVKPLASKPMDQAQKPKPQPSPAPPKSGPKRPAENNAHVTDPKRAKKKSTNSSSSFAAAAASDDETEEDGKKSGDNSKKPQRLWSEEDELAILKGVVEFSSKTGQDPLKFANANAFHDFMKRSLHVEVSSNQLKEKVRRLKKKFETNAGKGKNGEGPTFSKPHDQKAFELSKKVWGSEQGGGANGPVEKPKSNGNAAKSPKKKETGSRNVASAKKLKPETKLELAPVPVPADSLALKESGMMDIDQKPGSGCGSSLWREISRRREGVELDEDELKRGLELIGESKRAELEGKWKKIRLAEIELVANRSLLIGEQTKLIAEALQSSGH 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0305 433 MobiDBLite consensus disorder prediction 121 135 - -
Ssu1g0305 433 MobiDBLite consensus disorder prediction 1 190 - -
Ssu1g0305 433 MobiDBLite consensus disorder prediction 235 330 - -
Ssu1g0305 433 MobiDBLite consensus disorder prediction 301 327 - -
Ssu1g0305 433 Pfam Protein of unknown function, DUF573 187 282 IPR007592 GO:0006355
Ssu1g0305 433 PANTHER STOREKEEPER PROTEIN-LIKE 11 431 - -
Ssu1g0305 433 MobiDBLite consensus disorder prediction 67 83 - -
Ssu1g0305 433 MobiDBLite consensus disorder prediction 170 190 - -
Ssu1g0305 433 MobiDBLite consensus disorder prediction 40 63 - -
Ssu1g0305 433 PANTHER BNAANNG10740D PROTEIN-RELATED 11 431 IPR007592 GO:0006355
Ssu1g0305 433 MobiDBLite consensus disorder prediction 235 255 - -
Ssu1g0305 433 MobiDBLite consensus disorder prediction 14 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0305 Ssu-Chr1 7180901 7182202 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0305 86 427 GeBP Transcription Factor Family AT1G61730 33.148 3.64e-35 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Ssu1g0305 DUF573 1.9e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0305 - - gmx:100791520 498.049