Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0304 ATGGCTTCCCGCGTCGAGAACAAGCCTCCTCGCAGCCGCTCCAATCAAAAGGGGGGCGCCGAAGAAGGTTTCTCGGACAAGCGTCAGAGGATCGGCGCAGAGAGGATGGAGCAGCAGGGCCGAGTTAGGGCACCCCTCGTTGCTCTCAGAAACAAGGCAGCAGCAGATGCTAATGATGTTGGCGGCGTCGAGGGCTCCGAGTGTAGCGCTGTTGAGTTCACCAAAGACGACGTGGAGGCGTTGCTCAATGAGAAGACGAAGGGGAATCTTCGCTTTGATAATAAGAAAAAAATGGACCAGATGACAGATCTCATTAAACGGCTTAAACTCTGCATTCGATGGTTTAAGAGAGGCGAAGAAGGCCATATCCAAGAGAAAGAGAAGCTTCAGACTGCCCTAGAATCTGCTGAGAAGAAATGCATTGATACTGAGAATGAGATGAAGATTAAGATTGCAGAGTTGGATGAGACTATATCTAATTTGAGGGCGACAATTTCCTCTTTTGAAGAGGGAATTGCAAAGGAAGAGTCAGATAAATTGGAAGCTATTGCTTGTTACAGAAAAGAACAGGAAGCCAGAAGTGCAGCTGAGCAGATGCAAGCTTCTGTTTCAACTGAGCTTGAGAAAGTTCGGGAAGAGAAATCAGCTGCTGAGCGGAAGGCCGTTTCAAATGAGGACTTGTACAAGCGATCACAAGAGTATAATATGAGTTTGCAACAGTACAATAGTCGCCTTCAGACAGATCTTGAAACAACTAATGAGGCACATAAACGATTGGAGACAGAGAAAGCAACCATTGTTGAGAACCTTAGCAATGTGAGGAGCCACAATAAGGCATTGCAGGATCAGTTGGCATCTCTTAAAGCTTCACAAGATGAGGCTGCAAAGCAGAAAGAAATGTTAGCAAATGAACTCAAATGCCTTTGGGAAGAGTTAAAACAAGTAAGAGATGATCGAGATCGCCTACAGGCACAAGTACAAGCTTTGACTGGAGAAgtagaaaaatacaaagaatataCAGGGAAATCATGTGCGCAGTTGGATACCTTGACGATTAAAACAAATGCTCTTGAGGAGACGTGTTCTTCTCAAAGGGACCAAATAAATATGCTGCAACAGCAGTTGATTACTGAAAAGGAGAAGATAAAGaTGGCTGATTTATCTGCTTCAGAAACAAGAACAGTGTTTGAAGATCAGAAAAGAATTATACGTGAACTCCAGGAACAAGTTGCAGAGAAAGATTTCCAAGTAATTGAAGGAGAAAAGTTAAGGAAAAAATTGCACAACACTATcctgGAGCTAAAAGGAAATATTCGCGTGTTCTGCCGTGTCCGACCTTTGCTACCGCATGATGTTCCTGGAACAGACATGGTTGTTTCTTATCCCACGTCAACGGAAGCTCTTGGCCGGGGCATTGATTTGATACAGAGCGGGCAGAAGCACTCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCTCAGCAAGATGTTTTCATTGAGATATCCCAGCTGGTACAAAGTGCGCTTGATGGGTACAAGGTCTGCATCTTTGCTTATGGACAGACAGGTTCAGGCAAAACCTATACAATGATGGGTAGGCCTGATGCCCCCGAGCTGAAGGGGTTGATACCACGTTCTCTAGAACAGATATTCGAGAATAGTCAGTCCCTGAAAGATCAGGGGTGGAAGTACAAAATGCAGGCTTCAATATTGGAAATATATAATGAAACCATCAGGGATTTGTTATCATCAAATCGGTCAAGCGGTATTGATTCAACACGAACAGAAAACGGTGTTCCTGTTTCTGGAAAGCAGCCGTGCACTATTAAACAGGATGTCAATGGAAACCAATATGTTTCAGACCTCACTATTGTGGATGTTTGTAGTGCAAATGAGATTTCATCCCTTATGCAAAAGGCAGCACAAAGCAGGTCTGTAGGAAAAACAAAGATGAATGCAGAGTCATCACGAAGTCACTTTGTCTTTACTTTGCGTATATGTGGGATTAATGAGAACACTAAACAAGAAGTGCAAGGTTTGTTAAACCTGATTGATCTGGCTGGAAGTGAAAGAGTGTCGAGGAGTGAGGCAACCGGGGAGCGGTTGAAGGAAGCTCAGTGTATCAACCAAAGTCTCTCTTGTTTGAGTAAAGTCATATTTGCTTTGGCAAAGAAAAAGGATCATGTACCCTTCAGGGAATCAAAATTGACACAGCTTCTCCAGCCATGTCTTGGTGGGGATTCCAAAACTTTGATGTTTGTGAACATCTCACCTGATCCAGATTCTACTGGAGAGTCACTTTGTTCTCTACGTTTTGCCGCCGGAGTCAATGCCTGCGAGATTGGTATTCCGCGGCGTCAGACATCCACGCGGTCCTTTGATTCGCGTTTGAGCTGCGGCTGA 2406 0.4389 MASRVENKPPRSRSNQKGGAEEGFSDKRQRIGAERMEQQGRVRAPLVALRNKAAADANDVGGVEGSECSAVEFTKDDVEALLNEKTKGNLRFDNKKKMDQMTDLIKRLKLCIRWFKRGEEGHIQEKEKLQTALESAEKKCIDTENEMKIKIAELDETISNLRATISSFEEGIAKEESDKLEAIACYRKEQEARSAAEQMQASVSTELEKVREEKSAAERKAVSNEDLYKRSQEYNMSLQQYNSRLQTDLETTNEAHKRLETEKATIVENLSNVRSHNKALQDQLASLKASQDEAAKQKEMLANELKCLWEELKQVRDDRDRLQAQVQALTGEVEKYKEYTGKSCAQLDTLTIKTNALEETCSSQRDQINMLQQQLITEKEKIKMADLSASETRTVFEDQKRIIRELQEQVAEKDFQVIEGEKLRKKLHNTILELKGNIRVFCRVRPLLPHDVPGTDMVVSYPTSTEALGRGIDLIQSGQKHSFTFDKVFNHEASQQDVFIEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGRPDAPELKGLIPRSLEQIFENSQSLKDQGWKYKMQASILEIYNETIRDLLSSNRSSGIDSTRTENGVPVSGKQPCTIKQDVNGNQYVSDLTIVDVCSANEISSLMQKAAQSRSVGKTKMNAESSRSHFVFTLRICGINENTKQEVQGLLNLIDLAGSERVSRSEATGERLKEAQCINQSLSCLSKVIFALAKKKDHVPFRESKLTQLLQPCLGGDSKTLMFVNISPDPDSTGESLCSLRFAAGVNACEIGIPRRQTSTRSFDSRLSCG 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0304 801 Pfam Kinesin motor domain 443 778 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu1g0304 801 PANTHER KINESIN-LIKE PROTEIN KLP-3 26 801 - -
Ssu1g0304 801 MobiDBLite consensus disorder prediction 1 42 - -
Ssu1g0304 801 Coils Coil 119 164 - -
Ssu1g0304 801 SMART kinesin_4 435 788 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu1g0304 801 Coils Coil 354 374 - -
Ssu1g0304 801 Gene3D - 266 384 - -
Ssu1g0304 801 ProSiteProfiles Kinesin motor domain profile. 437 780 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu1g0304 801 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 777 IPR027417 -
Ssu1g0304 801 MobiDBLite consensus disorder prediction 20 37 - -
Ssu1g0304 801 CDD KISc_C_terminal 435 782 - -
Ssu1g0304 801 Coils Coil 242 339 - -
Ssu1g0304 801 PANTHER KINESIN-LIKE PROTEIN 26 801 - -
Ssu1g0304 801 Gene3D Kinesin motor domain 385 782 IPR036961 -
Ssu1g0304 801 Coils Coil 200 227 - -
Ssu1g0304 801 PRINTS Kinesin heavy chain signature 650 667 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu1g0304 801 PRINTS Kinesin heavy chain signature 681 699 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu1g0304 801 PRINTS Kinesin heavy chain signature 730 751 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu1g0304 801 PRINTS Kinesin heavy chain signature 512 533 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0304 Ssu-Chr1 7158166 7164589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0304 409 792 Calmodulin-binding Proteins AT5G65930 36.548 7.69e-72 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0304 K10405 - gmx:100818473 1312.36