Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0302 ATGAGTAATAATAATTGGGTGTTGGATTATGATTATCTAGACAGTATTCCCCTCCCCACCCTTGACCCACCCAATTTCTCTTGGTCCTCCTCCTCTCCTCCTCCCACACTCAGTGTGGAGCTAGATGACTCATTCAGAAATTCGGACGGTTTCAAGGAAAACGGATCAAGAAAACGTTTGAGGTCATCTGGTTCCAAAGCATGTAGAGAGAAAATGCGAAGGGATCGACTGAATGACAGgtttttggaaCTGGGGTCTACCCTGGACCCTGGAAGGCCTCTCAAAATGGACAAGGCTGTTATATTAAGTGATGCTGTTCGAATGGTGTCTCAGTTACGAGAGGAAGCTCAGAAGCTGAGAGAGTCTACTGAGACTCTACAGGCAAAAATCAATGAATTGAAGGCCGAGAAAATCGAGCTTCGTGATGAGAAGCAGCGACTAAAAGCAGAGAAAGATAACCTTGAGCAGAAGCTTAAAGCCTTGAGTTCACAACCTAGCTTCCTTCCTGCGTTTCCTGCACCAGGACAAGTTGTTGGGAGCAAGCTGGTGCCTTTCATGGGCTACCCAGGAGCTGCCATGTGGCAGTTTTTACCACCTGCTGCTGTTGATACCTCGCAAGACCATGTACTCAGGCCCCCAGTTGCATAG 648 0.4707 MSNNNWVLDYDYLDSIPLPTLDPPNFSWSSSSPPPTLSVELDDSFRNSDGFKENGSRKRLRSSGSKACREKMRRDRLNDRFLELGSTLDPGRPLKMDKAVILSDAVRMVSQLREEAQKLRESTETLQAKINELKAEKIELRDEKQRLKAEKDNLEQKLKALSSQPSFLPAFPAPGQVVGSKLVPFMGYPGAAMWQFLPPAAVDTSQDHVLRPPVA 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0302 215 CDD bHLH_AtILR3_like 66 141 - -
Ssu1g0302 215 Coils Coil 102 164 - -
Ssu1g0302 215 PANTHER TRANSCRIPTION FACTOR ILR3-LIKE 3 215 - -
Ssu1g0302 215 MobiDBLite consensus disorder prediction 23 43 - -
Ssu1g0302 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 132 IPR036638 GO:0046983
Ssu1g0302 215 Gene3D - 51 110 IPR036638 GO:0046983
Ssu1g0302 215 MobiDBLite consensus disorder prediction 23 71 - -
Ssu1g0302 215 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 112 IPR011598 GO:0046983
Ssu1g0302 215 PANTHER BHLH TRANSCRIPTION FACTOR 3 215 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Ssu1g0302 215 Pfam Helix-loop-helix DNA-binding domain 65 112 IPR011598 GO:0046983
Ssu1g0302 215 SMART finulus 67 118 IPR011598 GO:0046983
Ssu1g0302 215 Gene3D arf6 gtpase in complex with a specific effector, jip4 111 164 - -
Ssu1g0302 215 MobiDBLite consensus disorder prediction 45 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0302 Ssu-Chr1 7147125 7152041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0302 3 215 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 57.391 1.01e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu1g0302 HLH 7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0302 - - gmx:100790993 344.354