Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0298 ATGGCGGGTTATGGTGCTGAAAGTGACATCTATTGCTTGCAAACCATCAAGAAATTAGACCCGCTTAATCACTTGTCTAGCTGGGATTTCGAGAGCAATAAGGAAGGTGACATATGTAGATTTAGTGGTGTTGAATGCTGGAATCATGTGGAAGATAGAGTAATTAGTCTCCGGCTTTCTAATATGGGGCTGAAGGGCCAGTTTCCGCGTTGCATTGAAAATTTCACATGGTTACAGATGCTGGACCTCTCACACAACGAGTTCTCTGGATATGTCCCACCTGATATATCAACTAAGCTGCCATATCTGACCTCACTTGATCTCTCAAGTAACAATTTTAATGGGGAAATTCCAAAGGTTATTGCCAATTTGTCTGAGTTAATTACCCTCAGACTTGATGGCAACCAGTTAACTGGCCAAATCCCACAAGAACTTGGGTTGCTTCCCTGGCTTAGAGATTTTAGTGTTGCTAACAACTTGTTGGAAGGGCCAGTGCCTGTTTTTGTGAGCAATGTTGATGTGGGTTTGAGCTATGCCAACAATAGTGGACTATGTGGGGGAATACTAGGAAGTTGTGGCGAAAGCTTGTTTGGTAGAGCATTTTGGTATAGTTTTATTATTGGTTTCGTTTCTTCAGCAGCTTCTGTGCTAGTATCTTTCATGTACTATTATGCACCTTGGACAGAATTCAAAAAGAGGAGGAGTAACTCTGTACATCCCTTAAGAAACAAGCAGAACCATCAAAAGGACACTAGACAAGAAGCTGAATTGCTACCATTGGCCTTGCAAGAACAAGGAAGCAAAGagCTATCAAGATTGTTGGAAAGATTGATTCCTAGCATGAGCTTTATGGAATTATGCAAGGCAACTGATTACTTTAGCACAGATAACGTGTTAGGGATAGGAACGACAGGGATTATGTACAAGGCAAAGGTACCAAATAACTGTTTTCTGGCAGTTAAGAGACTATATGATGCTGAGAAGTACAAGAGGGAATTCTTACTTGAAACAATGATTCCGGGTAGACACAAGCATAGAAACATAGCTCCACTGCTTGGATTCTGCATAGAAAAAGAGGAAAGGATTTTGGTGTATAAGTACATCTCTAATGGGAGGCTCAGTGATTGGTTACATTCTGATGAGGcacatcaaacaataaaattagaatggCCGGAGAGAATTCACATTGCACTTGGACTTGCAAGAGGTTTATCCTGGCTCCATAAAAGGTGCAAGATAGTCCATCTCAATTTAGATTCAGAGTGTGTCTTGCTGGACAAGAATTTTGAGCCAAAAGTTTCCAATTTTGGCAAGGCTAAATTCCTAAACCAGACGGTTGAAGATCATGtgaggatgaaattgtttttgattGATGGACTTGGCGTAAAGGGTTCTGTTGAGAGGGATGTCTATGACTTTGGAATAATCCTTTTTGAACTAATAACAGGGAAAAGATTAAGTTCAACGACTGATTCTTCTGACAGTGTTAATGGCCATTTGATGAACTATATCAGTAACAACTTGTTCACTGATCCTGCTGATTTTTATGATGCCATTGACAAATCTATCATTGGGAAGGGTTTTGATGATAAAATCCTTCGTCTCCTTGAAGTTGCATGTGACTGTGTTAAGGCTTCTTTGAAGCAAAGGCCAAAGATGGTTGATATGCACAAAACTATAAGAGCCCTATGGCAGGGCTATAAACCCTGGTTTGATTCTGAAAGGCTGAAGCTATCTATGGGTTATCCTGACCAGATAACATGTACCAGCGAAATAGAATGTATTTGTTGA 1791 0.3948 MAGYGAESDIYCLQTIKKLDPLNHLSSWDFESNKEGDICRFSGVECWNHVEDRVISLRLSNMGLKGQFPRCIENFTWLQMLDLSHNEFSGYVPPDISTKLPYLTSLDLSSNNFNGEIPKVIANLSELITLRLDGNQLTGQIPQELGLLPWLRDFSVANNLLEGPVPVFVSNVDVGLSYANNSGLCGGILGSCGESLFGRAFWYSFIIGFVSSAASVLVSFMYYYAPWTEFKKRRSNSVHPLRNKQNHQKDTRQEAELLPLALQEQGSKELSRLLERLIPSMSFMELCKATDYFSTDNVLGIGTTGIMYKAKVPNNCFLAVKRLYDAEKYKREFLLETMIPGRHKHRNIAPLLGFCIEKEERILVYKYISNGRLSDWLHSDEAHQTIKLEWPERIHIALGLARGLSWLHKRCKIVHLNLDSECVLLDKNFEPKVSNFGKAKFLNQTVEDHVRMKLFLIDGLGVKGSVERDVYDFGIILFELITGKRLSSTTDSSDSVNGHLMNYISNNLFTDPADFYDAIDKSIIGKGFDDKILRLLEVACDCVKASLKQRPKMVDMHKTIRALWQGYKPWFDSERLKLSMGYPDQITCTSEIECIC 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0298 596 SUPERFAMILY L domain-like 35 192 - -
Ssu1g0298 596 Pfam Leucine rich repeat N-terminal domain 7 47 IPR013210 -
Ssu1g0298 596 Gene3D Phosphorylase Kinase; domain 1 253 367 - -
Ssu1g0298 596 Gene3D Transferase(Phosphotransferase) domain 1 368 569 - -
Ssu1g0298 596 ProSiteProfiles Protein kinase domain profile. 293 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0298 596 PANTHER RECEPTOR-LIKE PROTEIN 55 5 564 - -
Ssu1g0298 596 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 5 564 - -
Ssu1g0298 596 SUPERFAMILY Protein kinase-like (PK-like) 273 558 IPR011009 -
Ssu1g0298 596 Pfam Protein tyrosine and serine/threonine kinase 295 558 IPR001245 GO:0004672|GO:0006468
Ssu1g0298 596 Gene3D Ribonuclease Inhibitor 13 192 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0298 Ssu-Chr1 7055670 7057732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0298 7 567 Receptor kinase-like Gene Family AT3G28450 35.094 1.51e-101 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Ssu1g0298 PK_Tyr_Ser-Thr 1.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0298 - - gmx:106795644 1005.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1823 5 54368410 54371480 Ssu1g0298 1 7055670 7057732 PCT