Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0289 ATGTTCGCTGGAGGAATTTTCCGGCATGGGTCGCAGCCCATTATTCTCACTACTCTGTTATTCCTCTGCCTTGTTGCTTCCTCCCTCTCAGATGAACTTCAATCACTGATGAAGTTCAAGTCCTCTATACAAAGTTCAAACGTAAATGTTTTCAGTTCATGGACTCAGGCAAATTCTCCCTGCCAATTCACCGGGATTATCTGCAACTCCAAAGGTTTTGTTTCAGAAATCAATCTTTCGAAAAAACAACTTCAGGGCACTCTTCCTTTTGATTCACTTTGCGAGCTTCAATCGCTTGAGAAGATATCTTTGGGGTCCAACGACTTGCATGGCAGCATCAGTGAGGGGTTGAGGAAGTGCACCAACTTGAAGCACTTGGATTTGGGTATGAATTCATTCACTGGGGCAGTGCCTGACTTGTCAACTTTGAACAAGTTGGAGTTCTTGAGCTTAAACGCCAGCGAAATTTCTGGGGCCTTTCCGTGGAAATCATTGGAAAATTTAACCAGTCTTGAGTTCCTGAGTCTTGGAGATAACCTGTTGGAGGAAGCTCCTTTCCCTTTGGAGGTCTTAAAGCTTGAAAAATTGTATTGGCTTTACCTCACAAATTGCAGCATCACTGGGAAGATTCCACTGGGGATTGGAAATCTCACTCAGCTTCAGAATCTTGAGCTTTCTGACAACAACTTGACTGGTGAGATTCCAGCTGATATTGGAAAGCTTCAGACGCTGCGGCAGCTTGAGCTATATGATAACTATTTGAGTGGGAAAATCCCAGTTGGATTTGGCAACCTTACTAGTCTTGTTAACTTTGATGCTTCTTATAATCAGCTTGAAGGTGATCTTTCTGAGGTAAGGTTCTTGACAAACCTTGCATCCCTTCAGCTTTTTGGGAACCGGTTCTCAGGAGAAATTCCAAAGGAGCTTGGAGATCTCAAAAACCTCACACAACTTTCTCTTTATGGAAACAGCCTCACTGGTCCTCTTCCTCAAAAGCTTGGCTCATGGGTAGGCATGACATTCATTGATGTTTCAGACAATTCTCTTTCTGGTCCTATACCACCTCACCTGTGCAAGAACAACCAAATTGATGAACTGGCACTCTTGAACAACAGTTTCACTGGAACTATACCAGAAACATATGCAAACTGCACATCTGTGGCTCGGTTTCGCCTGAGCAGGAATTCGCTTTCGGGTGTTGTTCCTTCAGGCATATGGGGCTTGCCAAATCTGACACTACTTGATCTTGCAATGAACAAGTTTGAAGGTCCAGTGACATCTGATATTGCCAAAGCAAAATCTCTTGCGCAACTGTATTTATCTAACAACCGGTTCTCTGGTGAGTTGCCATTGGAAATCTCAGAAGCTTCTTCATTGGTGTCAATTCAGCTTAGTTCAAATCAATTTTCTGGTCACATCACAGAAACCATTGGCAACTTGAAGAAACTAACTAGTCTTACTTTGAATGGGAACAACCTTTCTGGTATTGTACCAGATTCCATTGGTTCTTGTACTTCTCTTAATGAGATAAACCTTGCTGGTAACTCTCTTTCTGGGGCTATACCAGCTAGCATTGGTTCTCTTCCAACCCTCAATTCATTGAACTTGTCCTCAAACAGGCTTTCTGGTGAAATTCCATCTAGTTTGTCATCTCTGAGACTGAGCCTTCTTGACTTATCAAACAACCAGTTGTTTGGCTCCATACCAGAATCAGTGGCTATTTCAGCCTTCAAAGATGGGTTCGTGGGAAACCCTGGCTTATGCAGCCAGACTTTGAAAGGTTTCAGACCATGTTCAGTGGAATCTAGCAGCTCCAGGCGCCTCAGAAACCTTGTGGTCTGTTTCATTGCTGTTATAATGGTTCTGCTTGGAGTGTGTTTCCTCTTCACGAAACTAAGGCAGAAGAAGTTTGAGAAGCGACTGAAGACTACTTCTTGGGATGTCAAGCAGTACCATGTACTAAACTTCAATGAGAATGAAATCGTTGATGGGATCAAGAGTGAGAATTTGATTGGCAAGGGAGGATCTGGGAATGTTTATCGGGTTGTGCTTAAAAGTGGGGTAGAATTTGCAGTGAAACATATATGGACTTCAAATTCAAGTGAGAGGGGAAGTTCTAGGAGCACCTCAGCTATGCTAAGGAGGAGTTCAAGGTCACCTGAGTTTGATGCAGAAGTGGCTACTCTTAGCTCTGTAAGGCATGTAAATGTCGTGAAGCTGTATTGTAGCATCACAAGTGAAGATAGCAGTTTGCTTGTTTATGAGTTCTTGCCAAATGGGAGCTTGTGGGACAGGTTGCACACCTGTAAGAAGAAGTCTGAGATGGGGTGGGAGGTTAGGTATGACATTGCATTGGGTGCTGCTAGAGGATTGGAGTACCTGCACCATGGGTGTGATAGACCTGTTATACATAGGGATGTCAAATCCAGCAACATATTGCTGGATGAGGAATGGAAGCCAAGGATTGCTGATTTTGGCCTTGCCAAGATTGTGCAGGGAGGAGCAGGCAATTGGACCAACGTAATTGCTGGAACACTTGGATACATACCTCCTGAGTATGCCTACACTTGTAAGGTGACAGAGAAGAGTGATGTTTACAGCTTTGGGGTAGTGCTGATGGAGTTGGTAACTGGGAAGAGGCCTATGGAGCCAGAGTTTGGAGAGAATCATGACATTGTGTATTGGGTATGCAGCAATATTAGGAGCAGAGAAAATGCTCTTGAATTGGTGGATCCTACCATTGCAAAGCACTTCAAAGAGGATGCCATGAAGGTGTTGAGAATCGCAACATTGTGCACGGGGAAAATTCCAGCTTCAAGACCGTCAATGAGAATGTTGGTTCAAATGCTGGAAGAGGCGGAGCCTTGTACCACAGCCAAAATGATTGTGACCATTGATGCTTAA 2904 0.4384 MFAGGIFRHGSQPIILTTLLFLCLVASSLSDELQSLMKFKSSIQSSNVNVFSSWTQANSPCQFTGIICNSKGFVSEINLSKKQLQGTLPFDSLCELQSLEKISLGSNDLHGSISEGLRKCTNLKHLDLGMNSFTGAVPDLSTLNKLEFLSLNASEISGAFPWKSLENLTSLEFLSLGDNLLEEAPFPLEVLKLEKLYWLYLTNCSITGKIPLGIGNLTQLQNLELSDNNLTGEIPADIGKLQTLRQLELYDNYLSGKIPVGFGNLTSLVNFDASYNQLEGDLSEVRFLTNLASLQLFGNRFSGEIPKELGDLKNLTQLSLYGNSLTGPLPQKLGSWVGMTFIDVSDNSLSGPIPPHLCKNNQIDELALLNNSFTGTIPETYANCTSVARFRLSRNSLSGVVPSGIWGLPNLTLLDLAMNKFEGPVTSDIAKAKSLAQLYLSNNRFSGELPLEISEASSLVSIQLSSNQFSGHITETIGNLKKLTSLTLNGNNLSGIVPDSIGSCTSLNEINLAGNSLSGAIPASIGSLPTLNSLNLSSNRLSGEIPSSLSSLRLSLLDLSNNQLFGSIPESVAISAFKDGFVGNPGLCSQTLKGFRPCSVESSSSRRLRNLVVCFIAVIMVLLGVCFLFTKLRQKKFEKRLKTTSWDVKQYHVLNFNENEIVDGIKSENLIGKGGSGNVYRVVLKSGVEFAVKHIWTSNSSERGSSRSTSAMLRRSSRSPEFDAEVATLSSVRHVNVVKLYCSITSEDSSLLVYEFLPNGSLWDRLHTCKKKSEMGWEVRYDIALGAARGLEYLHHGCDRPVIHRDVKSSNILLDEEWKPRIADFGLAKIVQGGAGNWTNVIAGTLGYIPPEYAYTCKVTEKSDVYSFGVVLMELVTGKRPMEPEFGENHDIVYWVCSNIRSRENALELVDPTIAKHFKEDAMKVLRIATLCTGKIPASRPSMRMLVQMLEEAEPCTTAKMIVTIDA 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0289 967 Pfam Leucine rich repeat 458 517 IPR001611 GO:0005515
Ssu1g0289 967 Pfam Leucine rich repeat 364 420 IPR001611 GO:0005515
Ssu1g0289 967 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Ssu1g0289 967 Pfam Protein kinase domain 667 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0289 967 SMART serkin_6 665 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0289 967 Gene3D Ribonuclease Inhibitor 288 606 IPR032675 -
Ssu1g0289 967 Gene3D Phosphorylase Kinase; domain 1 648 756 - -
Ssu1g0289 967 Gene3D Transferase(Phosphotransferase) domain 1 757 963 - -
Ssu1g0289 967 SUPERFAMILY L domain-like 192 424 - -
Ssu1g0289 967 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 11 960 - -
Ssu1g0289 967 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Ssu1g0289 967 SUPERFAMILY Protein kinase-like (PK-like) 656 951 IPR011009 -
Ssu1g0289 967 SUPERFAMILY L domain-like 383 572 - -
Ssu1g0289 967 CDD STKc_IRAK 671 952 - -
Ssu1g0289 967 ProSiteProfiles Protein kinase domain profile. 665 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0289 967 ProSitePatterns Protein kinases ATP-binding region signature. 671 693 IPR017441 GO:0005524
Ssu1g0289 967 PANTHER RECEPTOR-LIKE PROTEIN KINASE HAIKU2 11 960 - -
Ssu1g0289 967 SUPERFAMILY L domain-like 59 254 - -
Ssu1g0289 967 Gene3D Ribonuclease Inhibitor 186 287 IPR032675 -
Ssu1g0289 967 Gene3D Ribonuclease Inhibitor 31 185 IPR032675 -
Ssu1g0289 967 SMART LRR_typ_2 168 188 IPR003591 -
Ssu1g0289 967 SMART LRR_typ_2 528 552 IPR003591 -
Ssu1g0289 967 SMART LRR_typ_2 217 241 IPR003591 -
Ssu1g0289 967 SMART LRR_typ_2 480 503 IPR003591 -
Ssu1g0289 967 SMART LRR_typ_2 96 120 IPR003591 -
Ssu1g0289 967 SMART LRR_typ_2 312 336 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0289 Ssu-Chr1 6791200 6794609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0289 16 967 Receptor kinase-like Gene Family AT1G09970 58.169 0.0 1085
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu1g0289 Pkinase 2.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0289 - - ccaj:109814095 1692.94