Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0288 atgAAATTGGAAATAGGGAATTctaaagagaagaagaacattGAAGAAGTAGGAGATGGAAAACGTGCAAAGATATTAGGGACAGAAGCCGCGAGATGTATAGAGATGGAAGACGAGGAAATGGTAGCCAAAGTTGGAGAAAGCCTAAAAGAAGATTCGTCAAGGGTTTTTCCATGTCTAATCTGTTCAAGAAAGTTTTACAGTTCTCAAGCTGTAGGAGGACACCAAAATGCTCACGAGAAGAGAGAACAGCTGCAAGGAAGGCCAAAAGGGCTTCTGAGTACTCGTGTTTCCTTCGCTTCTCCATTCCCAGCCCCTATGGTTTTTGCTCCAACCCATCTATACATTTTAAATCCTTCAATGTTCGTCACTGCCCATGCAGCAAAACTCCCTTATCTCCCAAGCCATCAAATTTCAGAACAATTTGGATCAAATGGTGCACCTAGATTTGGCAATGCTCAGTTTTATGTGGGGGGGGCGGGTTGTTCAAAAAATCGGTTCCATGATGATGGGAAGAGCTCTAACTTCAGGTGGGGGACCACATCTCAACATATACCATTGATAAGTAACAATCAAAATCTTGGAATTCGGAAAAATGGTACAGAGAAAGATCAATAG 618 0.4094 MKLEIGNSKEKKNIEEVGDGKRAKILGTEAARCIEMEDEEMVAKVGESLKEDSSRVFPCLICSRKFYSSQAVGGHQNAHEKREQLQGRPKGLLSTRVSFASPFPAPMVFAPTHLYILNPSMFVTAHAAKLPYLPSHQISEQFGSNGAPRFGNAQFYVGGAGCSKNRFHDDGKSSNFRWGTTSQHIPLISNNQNLGIRKNGTEKDQ 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0288 205 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Ssu1g0288 205 PANTHER PROTEIN LATE FLOWERING 50 193 - -
Ssu1g0288 205 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
Ssu1g0288 205 PANTHER ZINC FINGER PROTEIN JAGGED 50 193 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0288 Ssu-Chr1 6764096 6766007 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0288 34 82 C2H2 Transcription Factor Family AT5G48890 56.604 2.20e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0288 - - gmx:100527084 256.144