Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0283 ATGAGGAGTTTTCATATGGAGATTTCATCAATCAGAGGGTTACCTGAACTGGAGATAATTGAGGATCCTAACTTTCTCCATCAGTGGCAGTTAAACTCTATTGATGTAACTAGCTTAACAGGTGCTACTTTTGGAGAGATTTTGCAAAAGCACTCATTATCTGATAACCCAAACTTCAACCCCAAAACACACATGGAAACATCACCAACAGGAATTGAAAGACCAGCAAAACAGCTCAGAAACAACAGCTGGAATCCCAACAAAAGTCAACAGACATCAGAGATACAATATGATTCATGCTCAAATCTTCTTTCATTTGTTAATTCAAATTACACAAGTGAATTGGGACTAGTGAAGCCCAAGGTGGAGATGGTGTGTCCTAAAATCGATAACAACACTCTTGCAGAGATGTTGATCTCCCAAGGAACCTTGGGGAATCAAAACTATCTCTTCAAGGCTTGCCAGGAGGCCAAAAAGATCGAGACACGTCCCAAACTTTCTCAACCTCAAGACCACATAATAGCTGAGAGGAAGCGACGAGAGAAGCTCAGCCAACGGTTCATTGCTCTATCTGCTCTCGTTCCAGGCCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGAAGCTATCAAGTACTTGAAGCAAATGCAAGAGAAAGTGAGTGCTCTTGAGGAGGAACAGAACAGGAAGAGAACTGTGGAGTCTGTGGTAATTGTGAAGAAATCTCAGCTATATAGTGATGCTGAAGACTTTTCTTCTTCAGACACTGGTGGTACATTTGATGAGGCACTACCTGAAATTGAAGCACGATTTTGTGAAAGAAATGTCCTCATAAGAGTACACTGTGAGAAGAATAAAGGAGTCATAGAGAAAACAATCAGCGAAATTGAGAAACTCCATCTAAAAGTCATCAATAGCAGTGCCATGACATTTGGGAGTTTCATCCTCGATATAACCATCATTGCTCAGATGGATATGGAATTTTGCATGACAGTGAAGGATCTTGTGAGAAGTTTACGCTCAGCTTTTTCACATTTCGTTTGA 1044 0.4071 MRSFHMEISSIRGLPELEIIEDPNFLHQWQLNSIDVTSLTGATFGEILQKHSLSDNPNFNPKTHMETSPTGIERPAKQLRNNSWNPNKSQQTSEIQYDSCSNLLSFVNSNYTSELGLVKPKVEMVCPKIDNNTLAEMLISQGTLGNQNYLFKACQEAKKIETRPKLSQPQDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGEAIKYLKQMQEKVSALEEEQNRKRTVESVVIVKKSQLYSDAEDFSSSDTGGTFDEALPEIEARFCERNVLIRVHCEKNKGVIEKTISEIEKLHLKVINSSAMTFGSFILDITIIAQMDMEFCMTVKDLVRSLRSAFSHFV 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0283 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983
Ssu1g0283 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 231 IPR036638 GO:0046983
Ssu1g0283 347 MobiDBLite consensus disorder prediction 53 92 - -
Ssu1g0283 347 CDD bHLH_AtNAI1_like 170 242 - -
Ssu1g0283 347 Gene3D - 166 238 IPR036638 GO:0046983
Ssu1g0283 347 MobiDBLite consensus disorder prediction 53 67 - -
Ssu1g0283 347 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 7 346 - -
Ssu1g0283 347 PANTHER BHLH TRANSCRIPTION FACTOR 7 346 - -
Ssu1g0283 347 MobiDBLite consensus disorder prediction 74 92 - -
Ssu1g0283 347 SMART finulus 173 222 IPR011598 GO:0046983
Ssu1g0283 347 Pfam Helix-loop-helix DNA-binding domain 170 217 IPR011598 GO:0046983
Ssu1g0283 347 Coils Coil 206 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0283 Ssu-Chr1 6730216 6732232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0283 6 347 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.909 2.36e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu1g0283 HLH 2.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0283 - - gmx:100798018 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1836 5 54748503 54749971 Ssu1g0283 1 6730216 6732232 PCT